| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1646 |
|---|
| Symbol | |
|---|
| ID | 5456258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1779717 |
|---|
| End bp | 1780934 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640877220 |
|---|
| Product | luciferase family protein |
|---|
| Protein accession | YP_001412922 |
|---|
| Protein GI | 154252098 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGCA AAAAGATGCG CTTCGGCGCC TTCATCGCCC CGTTCCACCC GCTGAACGAG
AACCCGACAC TTGCCATCGA GCGAGACATG GAACTGGTCC AATGGATGGA CAAGCTCGGT
TACGACGAAG CCTGGATCGG CGAACATCAT TCTGCCGGCT ATGAGCTGAT CGCAAGCCCG
GAAATCTTCA TCGCGACCGC GGCCGAGCGC ACCAAGCACA TCCGTCTCGG CACGGGTGTT
TCCTCGCTTC CCTATCACCA CCCGCTCATG CTGGCCGACC GCATCAACCA GCTGGATCAC
ATTACGCGTG GCCGCGTGAT GTTCGGCGTT GGCCCCGGCG CGCTTCCCTC CGATGCCTTC
ATGATGGGGA TTGAAGTTGC CAAGCAGCGC GACATGATGG ACGAAGCCCT CGACGTGCTC
GTACCGCTGC TGCGCGGCGA AACCGTCACC GCGAAAACGA GCTGGTTCGA GCTGAACGAA
GCGCGCCTGC AGATGACGCC TTACTCGCGT CCCAGTGTGG AAATCTCGGT CGCAAGCCAG
GTTTCGCCGA CAGGAGCGAC GGCGGCAGGC AAGCATGGAC TTGGCCTCCT CTCTATCGGT
GCCACATCAG CGGGCGGCTT CAACGCGCTT GCCACCAATT GGGCTATCGC GCAGGACAAC
GCCAAGGATT GCGGCCAGAC TGTAGAACGC GACCAGTGGC GGCTTGTAGG TCCGGTACAT
ATTGCCGAAA CCCGCGAGAA GGCGCGCGAG AATGTACGCT TCGGCCTCGA AAAGTGGCTC
TACTACTTCC GTGAAGTCGC TGCGCTGCCG CTCGCGCCCT CCGACGGCAG CGACCCTGTG
GACGCACTGA TTGCCTCGGG TATGGCCGTG ATCGGCACGC CTGAAGACGC GATTGCGCAG
ATCGAACGGC TGCAGAGCCA GTCGGGCGGC TTCGGAGCCT TCCTTCAGAT GGCGCACAAC
TGGGCCGACT TCGAGCAGAC AAAGCGTTCA TACGAGCTGA TGGCACGCTA TGTCTTCCCG
AAATTCCAGG AATTGAACGT CAACCGCGAA GCGTCGCTCG AATGGGCAAG CACCAACCGG
CCGACCTTTA TGGGACAAGC CATGATGGCG GTCGGCACAC GCGTCGCTCA GCACATCGAG
AAGAAGGGGA CAGAGAATAT CCGCCCGGAA ATTCTCGAAG CCATGGGCTT GGGCAAGAAG
CCGGACGCCG CTCAGTAA
|
|---|
| Protein sequence | MAGKKMRFGA FIAPFHPLNE NPTLAIERDM ELVQWMDKLG YDEAWIGEHH SAGYELIASP
EIFIATAAER TKHIRLGTGV SSLPYHHPLM LADRINQLDH ITRGRVMFGV GPGALPSDAF
MMGIEVAKQR DMMDEALDVL VPLLRGETVT AKTSWFELNE ARLQMTPYSR PSVEISVASQ
VSPTGATAAG KHGLGLLSIG ATSAGGFNAL ATNWAIAQDN AKDCGQTVER DQWRLVGPVH
IAETREKARE NVRFGLEKWL YYFREVAALP LAPSDGSDPV DALIASGMAV IGTPEDAIAQ
IERLQSQSGG FGAFLQMAHN WADFEQTKRS YELMARYVFP KFQELNVNRE ASLEWASTNR
PTFMGQAMMA VGTRVAQHIE KKGTENIRPE ILEAMGLGKK PDAAQ
|
|---|
| |