| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1613 |
|---|
| Symbol | |
|---|
| ID | 5455219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1748130 |
|---|
| End bp | 1749836 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640877186 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001412889 |
|---|
| Protein GI | 154252065 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.10785 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 76 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGA CCCAGAGCGC CGCCTCCGCA TCCCGCACGG GCGCCAATGC CGACCTTCTG
CTTGCCGATC TGCTGCTGCT GACGGGGCAG GCGGTGGAGG CGGCGAACAA GCTGCTCGCC
CAGGCGAAAA CAGCCGTGTT CGCCAAGGTG GCGAAGGACG GCAAGGTTTC GGCGGCGGCA
ATCGAGCGCG AACAATTTGC GGTGCATGGC TTTGCCTGGC TGGCAACCTA TGTGGAGGCG
CTGCGCCAGC TTGCCGCCTA TGCCGCGCGG ATGACCGAAG AGGGACGCTT CGGCGAGTTC
GAGGCGCTGA TCGTGCAATT CGCCTTCGGC GAATATCTGA ACCAGATTTC CGGCGGCATT
CCGATGAGCC AGGTGGAGAC GGTCCGGCCG CTCGATCTCG GCATTTCAGA TGGCGACCAT
GCAGGCTTCC ACACCGAAGC CGTGCGTACG CTTTGCGCGG CAGGCAACAC GCGCGGAACG
CGCGCGCGGC TCGCCGAACT CATCGCGGCG AATGCGGGCG CGGCGACCTT CGGCGACACG
GGGCTTGAGG AAACCTACGA CGCAATCCGC GACCAGATGC GCCGCTTCGC CGATGCCGAA
GTCATGCCCC ATGCGCATGA GTGGCATCTG AAGGACGACT ACATTCCGAT GCCCGTGGTC
AAACAGATGG CGGAGCTTGG CGTCTTCGGC CTGACGATCC CGGAAGAATT CGGCGGGCTC
GGCCTCGGCA AGGAATCCAT GTGCGTCGTC TCCGAGGAAT TGAGCCGGGG CTATATCGGC
GTCGGCTCGC TCGGCACGCG CTCCGAAATC GCGGCCGAGC TGATCCTTGG CGGCGGCACG
AAGGAACAGA AGGACAAGTG GCTGCCGAAG ATCGCGAGCG GCGAAGTGCT GCCGACGGCG
GTCTTCACCG AGCCGAACAC GGGCTCCGAT CTTGCCAGCC TGAAGACGCG CGGCAAGCGC
GACGGCGACG TCTACAAGGT GAACGGCAAC AAGACATGGA TCACGCATGC GGCGCGCGCC
GATGTGATGA CGCTGCTCTG CCGCACCAAT GACGAGCCGG GCTACAAGGG ACTGTCCATG
CTGCTGGCCG AAAAGCCGCG CGGTGGCGAC GAAGAGCCCT TCCCGGCGAA GGGCATGTCC
GGCGGCGAAA TCGAGGTACT CGGCTATCGC GGCATGAAGG AATTCGAAAT CGGTTTCGAC
GATTTCGAGG TGAAGGCGGA GAACCTTCTG GGCGGCGAGG AAGGCCAGGG CTTCAAGCAG
CTCATGCAGA CCTTTGAGAG CGCCCGCATC CAGACGGCGG CGCGCGCTGT CGGCGTTGCA
CAATCTGCGC TCGAACTCGG ACTTCGCTAC GCGCAGGACC GCATCCAGTT CGGCAAGCCG
ATCTACGACT TCCCCCGCGT GAACGGCAAG CTCGTCATGA TGGCGGTCGA GATCATGGTG
GCGCGCCAGC TTACTTATTT TGCCGCGCGC GAAAAGGACG GCGGCAGGCG CTGCGACCTT
GAGGCGGGAA TGGCAAAGCT TCTCGCCGCG CGCATCGCCT GGGCGGCGGC GGACAATGCG
CTGCAGATCC ATGGCGGCAA CGGCTTCGCA CTTGAATATC CGGTAAGCCG CGTGCTGTGC
GACGCGCGCA TCCTCAACAT CTTTGAAGGC GCGGCCGAAA TCCAGGCACA GGTAATCGCC
CGCCGCCTGC TGGAAGGCGG AAACTGA
|
|---|
| Protein sequence | MSQTQSAASA SRTGANADLL LADLLLLTGQ AVEAANKLLA QAKTAVFAKV AKDGKVSAAA
IEREQFAVHG FAWLATYVEA LRQLAAYAAR MTEEGRFGEF EALIVQFAFG EYLNQISGGI
PMSQVETVRP LDLGISDGDH AGFHTEAVRT LCAAGNTRGT RARLAELIAA NAGAATFGDT
GLEETYDAIR DQMRRFADAE VMPHAHEWHL KDDYIPMPVV KQMAELGVFG LTIPEEFGGL
GLGKESMCVV SEELSRGYIG VGSLGTRSEI AAELILGGGT KEQKDKWLPK IASGEVLPTA
VFTEPNTGSD LASLKTRGKR DGDVYKVNGN KTWITHAARA DVMTLLCRTN DEPGYKGLSM
LLAEKPRGGD EEPFPAKGMS GGEIEVLGYR GMKEFEIGFD DFEVKAENLL GGEEGQGFKQ
LMQTFESARI QTAARAVGVA QSALELGLRY AQDRIQFGKP IYDFPRVNGK LVMMAVEIMV
ARQLTYFAAR EKDGGRRCDL EAGMAKLLAA RIAWAAADNA LQIHGGNGFA LEYPVSRVLC
DARILNIFEG AAEIQAQVIA RRLLEGGN
|
|---|
| |