| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1322 |
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| Symbol | |
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| ID | 5456030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 1458817 |
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| End bp | 1459479 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640876893 |
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| Product | ribulose-phosphate 3-epimerase |
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| Protein accession | YP_001412599 |
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| Protein GI | 154251775 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
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| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.307834 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.00000000745159 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGCGGCA TCAAGATCGC ACCGTCGATT CTGGCATCGG ACTTCGCCCG TCTGGGCGAG
GAGGTGCGCG CCATCACGGA AGCGGGCGCC GACTATATCC ATGTCGATGT GATGGACGGG
CATTTCGTGC CGAACATCAC CATCGGCCCC GATGTGGTGA AGGCGATCCG GCCGCATTCC
GACAAGGTCT TCGACGTCCA TCTGATGATC TCGCCGGTCG ACCTCTATAT CGACGCCTTC
GCGAAGGCGG GCGCGGACAT CATCACCTTT CACCCGGAAG CGGGACCCCA CCCCCACCGC
ACCATCCAGG CGATCAAGGC GGCGGGCTGC AAGGCCGGGC TGTCGCTCAA TCCGGGCACG
CCGCTCGAGC TGCTCTGGCC GCTTCTCGGC GATCTCGACC TCGTGCTCGT CATGTCGGTA
AACCCCGGCT TCGGCGGGCA GAGCTTCATC GAAAGCCAGC TTGCCCGTAT CGAGATCATC
CGTAAACGGA TCGACGAGAG CGGACGCGCC GTCGAACTCG AGGTCGATGG CGGCATCAAT
CTCGACACGG CGCCGCGCGC CATCGCGGCG GGCGCCGATG TGCTCGTTGC CGGCACGGCG
ACATTCAAGG GCGGACCATC CGCCTATGCA AAGAACATTG CGGCGCTGCG CGGCGGCGCC
TGA
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| Protein sequence | MSGIKIAPSI LASDFARLGE EVRAITEAGA DYIHVDVMDG HFVPNITIGP DVVKAIRPHS
DKVFDVHLMI SPVDLYIDAF AKAGADIITF HPEAGPHPHR TIQAIKAAGC KAGLSLNPGT
PLELLWPLLG DLDLVLVMSV NPGFGGQSFI ESQLARIEII RKRIDESGRA VELEVDGGIN
LDTAPRAIAA GADVLVAGTA TFKGGPSAYA KNIAALRGGA
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