| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1254 |
|---|
| Symbol | |
|---|
| ID | 5455188 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1385906 |
|---|
| End bp | 1386742 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640876824 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_001412531 |
|---|
| Protein GI | 154251707 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGG TCTGCGTCAT CGGCTGGCCT GTCGAGCATT CGCGCTCGCC GCTGATCCAT
AATTACTGGA TCGGGCTCCA CGGTATCGAG GGCGCGGTCT ATGAACGGCT CGCGGTGCCG
CCGGATGCAG CGGCGGAGAC GATCCGCAAT CTTGGCGGCC TCGGTTTCAT CGGCGCCAAT
GTGACCGTGC CGCACAAGGA GACGGCCTTT GCCGCGCTTG CCCGGCATGA TGCCATCGCC
AAGCGGCTGA AGGCGGTCAA CACAATCGTC ACGACGCCGG CGGGGCTTGA GGGACGCAAC
ACCGATGGCT ATGGCTTCAT CGCCAATCTG AAAGACCGCG CGCCCGGCTG GGACGCGAAG
GCGGGACCGG CCGTTCTTCT CGGCGCGGGC GGCGCCGCGC GCGCGATTGC TGCCGCGCTC
GAGGATGAAG GCGCGCCGGA AATCAGGATT ATCAACCGCA CGCCATCCCG CGCCGAGGCG
TTGGCCCGCG ATCTCGGACT TCGGAACGCG CTTGTCTTCG CGGATGGTGA GGCGAAGACG
GCGCTCGACG GCGCCGCGCT TCTGGTCAAC ACGACGACGC TCGGCATGAA GGGCGAAAGC
GATGTCGATC TCGATATCTC GCCGCTTCCC GCCCCGGCCC TCGTCACCGA CATTGTCTAT
ACGCCGCTCG AAACCCGATT GCTGCGCCGC GCCCGCGAGG CAGGCTACAA GACCGTCGAC
GGGCTCGGCA TGTTGCTGCA TCAGGCGGTG CCGGGCTTCG AGGCCTGGTT CGGTGTGCGG
CCGCAGGTGA CGCCGGAACT CCGCGCGCTG GTGCTCGCCG ACATGGGAAT GAAATAA
|
|---|
| Protein sequence | MKKVCVIGWP VEHSRSPLIH NYWIGLHGIE GAVYERLAVP PDAAAETIRN LGGLGFIGAN
VTVPHKETAF AALARHDAIA KRLKAVNTIV TTPAGLEGRN TDGYGFIANL KDRAPGWDAK
AGPAVLLGAG GAARAIAAAL EDEGAPEIRI INRTPSRAEA LARDLGLRNA LVFADGEAKT
ALDGAALLVN TTTLGMKGES DVDLDISPLP APALVTDIVY TPLETRLLRR AREAGYKTVD
GLGMLLHQAV PGFEAWFGVR PQVTPELRAL VLADMGMK
|
|---|
| |