Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1188 |
Symbol | |
ID | 5453600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 1325395 |
End bp | 1326756 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640876759 |
Product | conjugal transfer protein TrbL |
Protein accession | YP_001412466 |
Protein GI | 154251642 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3846] Type IV secretory pathway, TrbL components |
TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCGGCG CAGGTGTCAT CGACAATTTC CTCGGGGTCT TCACCTCCTA CATCAACAGC GGGTTCGGAC TGCTCGGCGG CGAGGTCGCG TTCATCGCCA CAACGCTGAT CGTCATCGAT GTGACGCTTG CCGCCCTGTT CTGGAGCTGG GGCGCGGAAG ACGACATCAT CGCCCGGCTG GTGAAAAAGA CGCTCTTCGT CGGCGTCTTC GCCTATCTCA TCGGCAACTG GAACAACCTC GCCAAGATCG TCTTCGACTC GTTCGCGGGC CTCGGCCTCA AGGCTTCCGG CACCAGCTTC ACCGCGCAGG ATCTGATGCG ACCCGGCAAG GTCGCGCAGA CCGGGCTCGA CGCCGCGCGC CCCTTGCTCG AATCCATCTC CGACCTGATG GGCTGGATCG CGTTCTTCGA GAACTTCATC CAGATCGCCT GCCTGCTGTT CGCCTGGGCG CTGGTGCTGC TCGCCTTCTT CATCCTCGCG ATCCAGCTCT TCGTTACCCT GATCGAATTC AAGTTGACGA CGCTGGCGGG CTTCGTCCTC ATCCCGTTCG GCCTGTTCGG CAAGACCGCC TTCATGGCCG AGCGCGTGCT GGGCAATGTC GTCTCATCCG GCATCAAGGT GCTGGTGCTC GCCGTCATCA TCGGCATCGG CTCAACGCTG TTCAGCCAGT TTACGGCCGG CTTCGGCGGC GCAACGCCCA CAATCGACGA CGCCATGGCG ATTGTTCTTG CCGCGCTATC GCTGCTCGGG CTCGGCATCT TCGGCCCCGG CATTGCTGCC GGTCTGGTCA GCGGCGGACC ACAACTCGGC GCCGGTGCGG CGGTTGGCAC CGGGCTTGCC GTCGGCGGTG CCGCGCTCGC AGCTGGTGGC GCGGCAGGCC TTGCCATAAA GGGAGGAGCG GCTGCGATGT CCGGCGGTGC TGCTGCCGTG CGGGGCGGTG CGGCAGCGGC AGGCGGAGCC GCCGCGGCCT ACAGTGTCGG CTCGCTCGGC CAGTCCGGCG CAGCCGGTGT CGCCTCTGGT CTTGGCGGTG TCGCCCGCGC GGCCGGAGCA GCCGCCGTGT CGCCCCTGAG ACGCGCGACG GCGCGCGTCG CCGAAGGCGT CAAGTCCAGC TTCTCCGAAG GTGCGAAGGC AGGCTTCGGC GCAACGGGCG GTTCCTCGAC CATGAGCACG ATACCCGGCT CAGGCTCCGC AGGCGAAGCC GCCGCCGCAG CGCCCGGCGA CGGTCCGCCC GACTGGGCCA AGCGCATGAA GCGCCATCAG TCCCTCAGCC ACGGAGCCAC CCTCGCAGCG CACGCCGTCA AATCCGGCGA CAGCCATGGC GGCGGCTCTT CCGTCAATCT CTCCGAAAGT AACCGCTCAT GA
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Protein sequence | MGGAGVIDNF LGVFTSYINS GFGLLGGEVA FIATTLIVID VTLAALFWSW GAEDDIIARL VKKTLFVGVF AYLIGNWNNL AKIVFDSFAG LGLKASGTSF TAQDLMRPGK VAQTGLDAAR PLLESISDLM GWIAFFENFI QIACLLFAWA LVLLAFFILA IQLFVTLIEF KLTTLAGFVL IPFGLFGKTA FMAERVLGNV VSSGIKVLVL AVIIGIGSTL FSQFTAGFGG ATPTIDDAMA IVLAALSLLG LGIFGPGIAA GLVSGGPQLG AGAAVGTGLA VGGAALAAGG AAGLAIKGGA AAMSGGAAAV RGGAAAAGGA AAAYSVGSLG QSGAAGVASG LGGVARAAGA AAVSPLRRAT ARVAEGVKSS FSEGAKAGFG ATGGSSTMST IPGSGSAGEA AAAAPGDGPP DWAKRMKRHQ SLSHGATLAA HAVKSGDSHG GGSSVNLSES NRS
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