Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1179 |
Symbol | |
ID | 5454873 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 1314822 |
End bp | 1316684 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640876750 |
Product | putative transcriptional regulator |
Protein accession | YP_001412457 |
Protein GI | 154251633 |
COG category | [K] Transcription |
COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.379581 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 70 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAGAG ACGACCTCGT CGCCGCGCTC CAATCCATCG AATGGAACGA CATCGAATTC AAGGAAGCAG CCTGGGCTGT GCCCAAGGAC GCGCTTTCGA CTGTCAGCGC CTTCGCCAAC ACGGAAGGCG GGCACCTGGT GTTCGGCGTC AAGCAGGCCA ACGGCACATT TACCGTCACC GGCGTGACCG ATGCTGATAA AATACAAAAC GACTTTCTGG GCCAAGTTCG AGATTCAAAC AAAGTCAGCG TATTTTTGCC CATAGGCGGC ACGGTTCACG ACTTGGCCGA AGGCACAGTT CTGGCCTTTT ATATCCCCGA AGCCGAGCGG CATCAGAAAC CGGTCTATCT CGACGGCAAT CCGAAAAAAG CTCACATTCG TCGTGGTGGG CGCGATGACA CCTGCACAGG CGATGAGTTG CTGCGCTTCA TTCGTGATGC GTCGAATATC CGCTACGACG CCGAAACGCT CGATGTGGAT ATTGGCCGGT GTTTCGACGA AGCCTCTGTG CGTTGGTATC GTGCGCGCTT TGCCGCCAGC AACCCCGGCA AAGACACCGC TGCTGACGAC ATCACATTCC TGCGGAACTG GGGCTTTCTG GTCGAGCAAG GCGGCGTGCT GCGCCCTAGC CGCGCCGCCA TTCTGGTGCT GGGCAGCGGT GAATATGTCC GGCAGGTACT GCCGCGCATG GTCACGGACG TACAACTCTA CCGCAATGCC AGCACTGAAT ATGATTCCAC CGTCCGCTGG GCCGACCGCC TCTCGGTGGA GGACAACCTT ATCAAGGCTT GGCAGGCCAT TGTGGAGTTC TACTACCGCC ACAGCGAGCG CCCCTTTGCC GTCGACGCGA CCACCATGCG GCGTGACGAC GACCCGCCCG ACTACATCTC CTTCCGCGAA GCCGCGATCA ATCTGCTGAT CCATCAGGAT TTCGGCGACA CCACCCGTGT GCCGGTCATC CGCTTCTTCC GTGACCAGAC CGAGTTCTTC AATCCTGGCG ACGCCTTTGC CTCACGCGAG CAACTGCTCG ATCCGGGCGA TAAGGAGGTT CGCAACCCCA GCATCGTCAG CGCCTTCCGC CGCATCGGGC TGTCCGATCA GGGCGGCACC GGCGTGCGCG CCATCTTCGA CGGCTGGCGC AAACTGGGCT ACCTGCCGCC TGAGATCGAG AACCGCAGGG CCGAAAAAAG CTTCCGCCTG CGCTTGTGCA AGGTAAAGCT CATTACTGAA GCTCAGCTTC TTGCGCAGGC AAGCCTTGGC GCACACCTGT CCGAGCACGA GGCGGCGGTG TTTGCCTTCC TGCTGCGCAG CGGCCAGGTC GATGTAGCGG ACATCAAGGC GCTGACTGGT CTTACTGGCG CGCAGGCGCT GGATCTGGCG CAGCGCCTGA CTGTGCAAGT GCTGACGGAA CCGCTCGGCG AGGCGGCCCA CACATGGCGG CTGGTCCCTC ACTTGCGCAC CCGCTTCGCC GCCGAAACGG CTGAAGATAC CACGGATCAA CCGACTGGCG CGGAAACGGT GGTGGCAGGC GCTACCGATC AAGTCACCGA ACAAGTTGCA CAGGAACAGC CCGGACTTGA TCGGTCACTT GATCGGTTGA CGGAGGTGCA GTGGCATATC GTCGGCTACG CCGATGTCCC GCGCTCGCTG GCCGAACTGA TGGCTCACGC CGGCTATCGC CAACGACCGC ACTTCGTTGC CACGCATATG GAGCCGCTCC TAGCCGGCGG CGTACTGCGC CCAACTATCC CGGACAAGCC GCGCTCGTCG CGGCAACGCT ACGTGCTCAC AGAAGCGGGC ATCCAACTCA AGCTGCTGCA CGAACAGGTC GCGGCCAAGC CGGACGAAGA AAATGGATAT TGA
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Protein sequence | MTRDDLVAAL QSIEWNDIEF KEAAWAVPKD ALSTVSAFAN TEGGHLVFGV KQANGTFTVT GVTDADKIQN DFLGQVRDSN KVSVFLPIGG TVHDLAEGTV LAFYIPEAER HQKPVYLDGN PKKAHIRRGG RDDTCTGDEL LRFIRDASNI RYDAETLDVD IGRCFDEASV RWYRARFAAS NPGKDTAADD ITFLRNWGFL VEQGGVLRPS RAAILVLGSG EYVRQVLPRM VTDVQLYRNA STEYDSTVRW ADRLSVEDNL IKAWQAIVEF YYRHSERPFA VDATTMRRDD DPPDYISFRE AAINLLIHQD FGDTTRVPVI RFFRDQTEFF NPGDAFASRE QLLDPGDKEV RNPSIVSAFR RIGLSDQGGT GVRAIFDGWR KLGYLPPEIE NRRAEKSFRL RLCKVKLITE AQLLAQASLG AHLSEHEAAV FAFLLRSGQV DVADIKALTG LTGAQALDLA QRLTVQVLTE PLGEAAHTWR LVPHLRTRFA AETAEDTTDQ PTGAETVVAG ATDQVTEQVA QEQPGLDRSL DRLTEVQWHI VGYADVPRSL AELMAHAGYR QRPHFVATHM EPLLAGGVLR PTIPDKPRSS RQRYVLTEAG IQLKLLHEQV AAKPDEENGY
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