Gene Plav_1179 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_1179 
Symbol 
ID5454873 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp1314822 
End bp1316684 
Gene Length1863 bp 
Protein Length620 aa 
Translation table11 
GC content61% 
IMG OID640876750 
Productputative transcriptional regulator 
Protein accessionYP_001412457 
Protein GI154251633 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.379581 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAGAG ACGACCTCGT CGCCGCGCTC CAATCCATCG AATGGAACGA CATCGAATTC 
AAGGAAGCAG CCTGGGCTGT GCCCAAGGAC GCGCTTTCGA CTGTCAGCGC CTTCGCCAAC
ACGGAAGGCG GGCACCTGGT GTTCGGCGTC AAGCAGGCCA ACGGCACATT TACCGTCACC
GGCGTGACCG ATGCTGATAA AATACAAAAC GACTTTCTGG GCCAAGTTCG AGATTCAAAC
AAAGTCAGCG TATTTTTGCC CATAGGCGGC ACGGTTCACG ACTTGGCCGA AGGCACAGTT
CTGGCCTTTT ATATCCCCGA AGCCGAGCGG CATCAGAAAC CGGTCTATCT CGACGGCAAT
CCGAAAAAAG CTCACATTCG TCGTGGTGGG CGCGATGACA CCTGCACAGG CGATGAGTTG
CTGCGCTTCA TTCGTGATGC GTCGAATATC CGCTACGACG CCGAAACGCT CGATGTGGAT
ATTGGCCGGT GTTTCGACGA AGCCTCTGTG CGTTGGTATC GTGCGCGCTT TGCCGCCAGC
AACCCCGGCA AAGACACCGC TGCTGACGAC ATCACATTCC TGCGGAACTG GGGCTTTCTG
GTCGAGCAAG GCGGCGTGCT GCGCCCTAGC CGCGCCGCCA TTCTGGTGCT GGGCAGCGGT
GAATATGTCC GGCAGGTACT GCCGCGCATG GTCACGGACG TACAACTCTA CCGCAATGCC
AGCACTGAAT ATGATTCCAC CGTCCGCTGG GCCGACCGCC TCTCGGTGGA GGACAACCTT
ATCAAGGCTT GGCAGGCCAT TGTGGAGTTC TACTACCGCC ACAGCGAGCG CCCCTTTGCC
GTCGACGCGA CCACCATGCG GCGTGACGAC GACCCGCCCG ACTACATCTC CTTCCGCGAA
GCCGCGATCA ATCTGCTGAT CCATCAGGAT TTCGGCGACA CCACCCGTGT GCCGGTCATC
CGCTTCTTCC GTGACCAGAC CGAGTTCTTC AATCCTGGCG ACGCCTTTGC CTCACGCGAG
CAACTGCTCG ATCCGGGCGA TAAGGAGGTT CGCAACCCCA GCATCGTCAG CGCCTTCCGC
CGCATCGGGC TGTCCGATCA GGGCGGCACC GGCGTGCGCG CCATCTTCGA CGGCTGGCGC
AAACTGGGCT ACCTGCCGCC TGAGATCGAG AACCGCAGGG CCGAAAAAAG CTTCCGCCTG
CGCTTGTGCA AGGTAAAGCT CATTACTGAA GCTCAGCTTC TTGCGCAGGC AAGCCTTGGC
GCACACCTGT CCGAGCACGA GGCGGCGGTG TTTGCCTTCC TGCTGCGCAG CGGCCAGGTC
GATGTAGCGG ACATCAAGGC GCTGACTGGT CTTACTGGCG CGCAGGCGCT GGATCTGGCG
CAGCGCCTGA CTGTGCAAGT GCTGACGGAA CCGCTCGGCG AGGCGGCCCA CACATGGCGG
CTGGTCCCTC ACTTGCGCAC CCGCTTCGCC GCCGAAACGG CTGAAGATAC CACGGATCAA
CCGACTGGCG CGGAAACGGT GGTGGCAGGC GCTACCGATC AAGTCACCGA ACAAGTTGCA
CAGGAACAGC CCGGACTTGA TCGGTCACTT GATCGGTTGA CGGAGGTGCA GTGGCATATC
GTCGGCTACG CCGATGTCCC GCGCTCGCTG GCCGAACTGA TGGCTCACGC CGGCTATCGC
CAACGACCGC ACTTCGTTGC CACGCATATG GAGCCGCTCC TAGCCGGCGG CGTACTGCGC
CCAACTATCC CGGACAAGCC GCGCTCGTCG CGGCAACGCT ACGTGCTCAC AGAAGCGGGC
ATCCAACTCA AGCTGCTGCA CGAACAGGTC GCGGCCAAGC CGGACGAAGA AAATGGATAT
TGA
 
Protein sequence
MTRDDLVAAL QSIEWNDIEF KEAAWAVPKD ALSTVSAFAN TEGGHLVFGV KQANGTFTVT 
GVTDADKIQN DFLGQVRDSN KVSVFLPIGG TVHDLAEGTV LAFYIPEAER HQKPVYLDGN
PKKAHIRRGG RDDTCTGDEL LRFIRDASNI RYDAETLDVD IGRCFDEASV RWYRARFAAS
NPGKDTAADD ITFLRNWGFL VEQGGVLRPS RAAILVLGSG EYVRQVLPRM VTDVQLYRNA
STEYDSTVRW ADRLSVEDNL IKAWQAIVEF YYRHSERPFA VDATTMRRDD DPPDYISFRE
AAINLLIHQD FGDTTRVPVI RFFRDQTEFF NPGDAFASRE QLLDPGDKEV RNPSIVSAFR
RIGLSDQGGT GVRAIFDGWR KLGYLPPEIE NRRAEKSFRL RLCKVKLITE AQLLAQASLG
AHLSEHEAAV FAFLLRSGQV DVADIKALTG LTGAQALDLA QRLTVQVLTE PLGEAAHTWR
LVPHLRTRFA AETAEDTTDQ PTGAETVVAG ATDQVTEQVA QEQPGLDRSL DRLTEVQWHI
VGYADVPRSL AELMAHAGYR QRPHFVATHM EPLLAGGVLR PTIPDKPRSS RQRYVLTEAG
IQLKLLHEQV AAKPDEENGY