| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1107 |
|---|
| Symbol | |
|---|
| ID | 5454597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1216725 |
|---|
| End bp | 1217666 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640876677 |
|---|
| Product | homocysteine S-methyltransferase |
|---|
| Protein accession | YP_001412385 |
|---|
| Protein GI | 154251561 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2040] Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0120891 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAT ACAGAAATCG CCTGCCGCAG ACGCAAGGCG GATTGTTTCT CAGCGATGGC
GGAATCGAAA CCACGCTGAT TTTCGAGGAT GGATTCGAAC TCCCTTATTT CGCCGCCTTC
CACCTGCTGC AGGATCAGGC GGGTACGGAG GGTTTGCGCG CCTATTTCCG CCGCCATGCG
AAGATTGCGG TGGATGCGCG CACCGGCTTC ATTCTCGAAA GCCCGACCTG GCGCGCGAGC
CCGGACTGGG GCCAGAAGCT CGGCTATACG CTGGAGGCGC TGGATGCGGC GAACCGCGTG
GCGCTGAGGC TGATGCATGA GCTGCGCGCC GAATTCGAGA CGCCCTCCTC TCCCATGGTC
ATCAGCGGCT GTGTGGGCCC GCGCGGCGAC GGCTATATCG CCGGCGAGGC GATGAGCCCG
GAGGAAGCGG AGGCCTATCA CGCGCGGCAA ATCCGTCTTT ATGCGGAGGA AGGCGCGGAT
ATGGCGACGG CTATCACCAT GACGAATGTC AACGAGGCCG TGGGCGTCAC GCGCGCGGCG
AAGGCGGCGG GGCTGCCTGT TGCAATCTCC TTCACGGTGG AGACGGACGG GACGCTGCCG
GCCGGCGACC GGCTGGGCGA CGCCATTGCG GCCGTGGACG CGGCGACGGG ACGCACCCCC
GCCTATTACA TGATCAACTG TGCGCACCCG GACCATTTCG ACGCCGTGCT GAAAGGCGAA
TGGGTGAAGC GGATCGGCGG CATTCGCGCC AATGCGTCGC GGTGCAGCCA TGCGGAACTC
AACGAGGCGG AGGAACTGGA CTTCGGCAAC CCGCAAGAGC TTGGCCAGCA GTATCGCGAT
TTGCGGGCGC GGTTTCCGCA GATCAATGTG ATGGGCGGAT GCTGCGGCAC GGACCACCGG
CATATCGAGG CGATTTCTTC GGCTTGTCTC GAGACGGCGT AG
|
|---|
| Protein sequence | MTKYRNRLPQ TQGGLFLSDG GIETTLIFED GFELPYFAAF HLLQDQAGTE GLRAYFRRHA
KIAVDARTGF ILESPTWRAS PDWGQKLGYT LEALDAANRV ALRLMHELRA EFETPSSPMV
ISGCVGPRGD GYIAGEAMSP EEAEAYHARQ IRLYAEEGAD MATAITMTNV NEAVGVTRAA
KAAGLPVAIS FTVETDGTLP AGDRLGDAIA AVDAATGRTP AYYMINCAHP DHFDAVLKGE
WVKRIGGIRA NASRCSHAEL NEAEELDFGN PQELGQQYRD LRARFPQINV MGGCCGTDHR
HIEAISSACL ETA
|
|---|
| |