| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1083 |
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| Symbol | |
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| ID | 5455092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 1186826 |
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| End bp | 1189282 |
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| Gene Length | 2457 bp |
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| Protein Length | 818 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640876653 |
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| Product | patatin |
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| Protein accession | YP_001412362 |
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| Protein GI | 154251538 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03607] patatin-related protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGAAA AGGAACTCAG GCTCGCTCTG GTGTGCTACG GCGGCGTCTC TCTTGCCGTC
TATATGCACG GGGTGACGAA GGAAATTCTG AAGCTCGTCC GGGCGTCACG TGTCTATCAC
CACGACCTCG CCCGCTCGCA CCAGGCTTCC GCCACCTATC TCGACGTGGA TCACGACGAC
CGGGAGACGG ATACCGAAGA ACTCTATTTC GAGTTAATCC AGGCGATCGG CCAGTCACTC
GAGCTGCGCG TCTTCGTCGA CACGATCGCG GGCGCTTCGG CCGGTGGGAT CAACGGCGTA
TTGCTGGCGC GCGCGCTGGC GCACGACCTG CCGATGGATT CGCACCGAAA AATGTGGCTG
GAGCAGGCGG ATATCGTGGC GCTGATGGAC GAGAAGCACC TCGCCGGAAA GTGGGACAAG
CTTTTCATGA AGCCCATTTT CTGGGGGCTG ACCGACAAAT GGCTTTCGCG CTATGCGCCC
GACATCGAGA TGCGTCAAAA GCTGCAACTC TTTACGCGCT CGCGATGGTT TCAACCGCCC
TTTTCCGGCG CGATCATGAG CGGAATGCTG CTCGATGCCT GCCTCTCCAT GGGCGAGGCA
GCACCGGCAA ATGCGTCACT GCTGCCGACA GGACATCGGC TCGACCTCAT CGTCTCAGTG
ACCGATTTTC ACGGCTACAG CCAACATATC CCCCTGCATG ATCCCGTTTC AATCCGGGAG
CGGGAGCACA GGCATATCCT GAAATTTTCC TACTTCCAGC ACCCGAGCGG CGCCATCGAC
AGCGATTTCG ATCGCGAGCA TGTACCAGGC CTCGTTTTTG CCGCGCGGGC GACATCGTCA
TTTCCCGGTG CTTTTCCACC GGCGCGAATA GGAGAGATCG AGAAGGTTCT CAATGACCGC
GAACTGGAGT GGTCCACGCG CGAGGAATTT CTGCACGAGA ACTTCAAGCC GTTGATCGCG
GCAGGCTCCG ACCCCGTGAA AGCCTCTTTC ATCGATGGCA GCGTTCTCAA CAACAAACCT
TTCGCCGAGG CCATCACGGC CATTCGCGGG CGGCCCGCTT ACCGGGAAGT GGACAGGCGC
GTGGTCTATA TCGACCCTGA TCCGAAGGGC GGTCGCCTGG AAGCTGGCGG TGCAGCACCC
GGATTTTTCC ATACGATACG CGGTGCGCTC TCCGATATTC CCCGAAACCA GCCGGTGCGC
GATGAGCTGG AAGCTCTGCA CGATTTTTCA GAGCGCGTGA GGCGCTACCG GCAAATCGTA
TCCGCAACGC GGCCTCATGT TCGCCAGCGG ATCGCACGCC TTTTCGACGG AAAGGCGCTG
ACAGACCCGA CGCCCGAGCT TCTGGCCTCG CTCAGGAACA GTGCCAACGC GCAGGCGGCG
CTCGAGGCGG GATATGCGTA TGACGCATAC ATTCAGCTCA AGGTTTCCTC GGTGCTAGAC
CAGATCACCG GGATCATCGC CGATCTGAGC GAGGCGGTGC ATCACCCCAG CGACCGGCTT
GCCCTTTCGC GCGCAGTGGA AGCGTGGGCG AAAGAGCGCG AGATTTTTCC TGTGCACTGG
TTTACCCACG CGACGCAGGG CATGGAGCCC AGCAAGGAAG ACTCCTGGGT GCGCTTCCTG
CGCGAGTTCG ATGTCGGCTT CCGCGTGAGG CGGCTGCGCT TCGTGGTTCG GCGTCTCAAC
GAACTCTATG AAGGGATCGG GGCAGGCGAG AACATTTATT ACAATCCCGA TGCCCTCGAC
GATTTCAAGG CACAGCTTTA CAGAAGCCTC GAACGGCTGC AGTCAGAAAC CAGGACGCGG
CTGCGCTCGA CTGAAACAAC GCTTCTGTGC AAGGCGATCT ATGATGACGG CGTGGCCGAA
CCCCACGAAA TCGATGGCTT CACGGCGCAT GTCGCACCGA GGCTGAACCT TGTCGGCCTC
GACCGCGAAG TGGATGAGGC CTTTACGCAG CTCGCCCAGA TGCCGCTTCC GGCGGAAGTT
CGCGTCGAAC TGCTGCAAGC ATATGTCGGG TTTCCATTTT TCGATGTGCT GACGCTGCCG
CTCAACAAAT GGCAGGATCT CGACGATGTG GACACGGTGC AGGTGGACCG CATCAGCCCG
GAAGACGCCA AGGCGATCCG CGAGGGCGGC GCACCGGCGA CACTGATGGG CCGCGACCTC
GGCTACTTCG CCGCCTTTTT CAGCCGCCGC GCCAGAGAGA ATGATTATCT ATGGGGGCGG
CTTCACGCTG CAGACAGGCT GGTCGACATC GTGGCGAGCA GCGCACCCGG GGCCGTGGCG
AAATCGGGCA TCGACCTGGC GCAATTGAAG GCGAAGCTTT TCCGTTCAAT CATAAAGGCG
GAACGGCCGC ACCTCGCCAA TGTGCCCGAG CTCATGGCCG ATCTCGAAAG GGAGATCAAA
ATCCGGTTTG GCGACGAGAA GGCCGACGAA GAAGCGGCGA TCTTCCAGAA CGCATAA
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| Protein sequence | MKEKELRLAL VCYGGVSLAV YMHGVTKEIL KLVRASRVYH HDLARSHQAS ATYLDVDHDD
RETDTEELYF ELIQAIGQSL ELRVFVDTIA GASAGGINGV LLARALAHDL PMDSHRKMWL
EQADIVALMD EKHLAGKWDK LFMKPIFWGL TDKWLSRYAP DIEMRQKLQL FTRSRWFQPP
FSGAIMSGML LDACLSMGEA APANASLLPT GHRLDLIVSV TDFHGYSQHI PLHDPVSIRE
REHRHILKFS YFQHPSGAID SDFDREHVPG LVFAARATSS FPGAFPPARI GEIEKVLNDR
ELEWSTREEF LHENFKPLIA AGSDPVKASF IDGSVLNNKP FAEAITAIRG RPAYREVDRR
VVYIDPDPKG GRLEAGGAAP GFFHTIRGAL SDIPRNQPVR DELEALHDFS ERVRRYRQIV
SATRPHVRQR IARLFDGKAL TDPTPELLAS LRNSANAQAA LEAGYAYDAY IQLKVSSVLD
QITGIIADLS EAVHHPSDRL ALSRAVEAWA KEREIFPVHW FTHATQGMEP SKEDSWVRFL
REFDVGFRVR RLRFVVRRLN ELYEGIGAGE NIYYNPDALD DFKAQLYRSL ERLQSETRTR
LRSTETTLLC KAIYDDGVAE PHEIDGFTAH VAPRLNLVGL DREVDEAFTQ LAQMPLPAEV
RVELLQAYVG FPFFDVLTLP LNKWQDLDDV DTVQVDRISP EDAKAIREGG APATLMGRDL
GYFAAFFSRR ARENDYLWGR LHAADRLVDI VASSAPGAVA KSGIDLAQLK AKLFRSIIKA
ERPHLANVPE LMADLEREIK IRFGDEKADE EAAIFQNA
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