| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0961 |
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| Symbol | |
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| ID | 5456214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 1039859 |
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| End bp | 1041028 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640876532 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001412241 |
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| Protein GI | 154251417 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.348921 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATTTCC GAACCATGCG CCTGCCCGCC CGCGCGGCCG GGCTTTTCAT CGCGGGTGCG
CTGCTGCTGC CGCTGGCGGG CTGCGGCGAG GAGGAGCAGG CCGAGACCGC GGCGGAAGAA
GCGATCGGTG TTTTCGCCAG CATGGTGACA CGGCAGGAAC TGGCGGAGCC TGTGACCGGC
ACGGGCACCA TCGCCGCGCA CAAGACGACG GTGCTGGGGC CGCGCGTCGA CGGCATCATC
GAGGAGATCA TGGTGCGCGT CGGCGACCGC GTGACGGCGG GGCAGCCGCT TTTCCGCACG
CGCGACGCCG AATGGAAGCT GAAGGTCGCG GAACTAGAAA ATCATGTGCG GCTGGCGAGC
GCCGAAGCGC AGAACGCGCA GAAGGGTTTC GCGCGCGCTG AGGAACTGCA CGGCAAGGGC
TTCGTCTCGA ACGGCAAGCT GGACGATGCG CGCGCGGCGC GCGACGCGGC GAATGCGCGG
CTCGGCATGG CGAAGGCGCA GCTCGCGACG GCGCAACAGA TGCTCGAGGA CTGCGTGGTG
ACGGCGCCCT TCAATGGCGT CATCACCAAG CGCGACGTGG ACGAAGGCAA GTTCATGGCG
ACGCGAATGG GCGGCATGGG CGGCGACGGC GGCGGCGTGC TGCAGATCAT GAAGATCGAC
ATCGTGGCGG CGATCGTGAA TGTGCCGGAA ATCTATCTGT CGAAATTCAA GGTGGGCAGC
AAGGGGAAGG TTTTCCTCGA CGGCATCGAC AAGAGCTACG ACTCCTATGT CGCCATCCTC
AACGACCGGA TCGACCCGGT GACGCGCTCG GTGGAAGTGC GGCTGCCGAT CCTCAACAAG
GATTATGAAG TGAAGCCCGG CCTGTTTGCG CGGGCGGAAA TCTATCCCGA GGCGCGCGAG
GTGCTGGCGC TCGACCGCGC GGCGCTGCTG GGCAGCGAAG CCAAGCGGCA TGTCTTCGTG
GCGGAGAACG GACGGGCGAA ACGCATCGAC GTGACGGCGC GCCAGATCGA TGCGACACGC
GTCGAAGTGC TGTCGGGGCT GAAGGAAGGC GACAAGGCGC TTTCGGGCCC GAACGCGGCG
CTGCTGATCG ACGGCATGGC GGTGCGGATC GAGGGGTCTG ACGAGCAGGC GCTTGCCAGC
GATGCGGCCG CACAGCCGAA CGTGAAATAG
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| Protein sequence | MYFRTMRLPA RAAGLFIAGA LLLPLAGCGE EEQAETAAEE AIGVFASMVT RQELAEPVTG
TGTIAAHKTT VLGPRVDGII EEIMVRVGDR VTAGQPLFRT RDAEWKLKVA ELENHVRLAS
AEAQNAQKGF ARAEELHGKG FVSNGKLDDA RAARDAANAR LGMAKAQLAT AQQMLEDCVV
TAPFNGVITK RDVDEGKFMA TRMGGMGGDG GGVLQIMKID IVAAIVNVPE IYLSKFKVGS
KGKVFLDGID KSYDSYVAIL NDRIDPVTRS VEVRLPILNK DYEVKPGLFA RAEIYPEARE
VLALDRAALL GSEAKRHVFV AENGRAKRID VTARQIDATR VEVLSGLKEG DKALSGPNAA
LLIDGMAVRI EGSDEQALAS DAAAQPNVK
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