| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0844 |
|---|
| Symbol | |
|---|
| ID | 5456343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 915941 |
|---|
| End bp | 918040 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640876415 |
|---|
| Product | oligopeptidase B |
|---|
| Protein accession | YP_001412124 |
|---|
| Protein GI | 154251300 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1770] Protease II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.740368 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCA CACCTCCCGC CGTTGCGCCC CTGGCCCCGA AGCGGCCGCA GACGGATGTG
CATCACGGCA TTTCGCGGAC CGACGATTAT GCGTGGCTGC GCGACGAGAA CTGGCGCGAG
GTGATGCGCG ATCCGGCGGT TCTCGATACC GACATCCGCG CCTATCTCGA CGCCGAGAAC
GCCTATACGG AAGCGGCGCT CAAACCTGTC GCCGAATTGC GCGAGACACT CTTCAAGGAG
ATGAAGGGGC GGATCAAGGA GGATGACAGC TCCGTGCCGT CGCCCGACGG CGCTTTTGCC
TATTACACGC GCTTTGTCGA AGGGGCGCAG CATCCGCTTT TCTGCCGCAG GCCGCGAGAG
GCGGAAGCGG GCGAGGAAAT ATTGCTTGAC GCGAACAAGG AAGCGGAGGG CGAGGCCTAT
TTCAAGATCG GCGATGTGGA CCATGCGCCG ACGCACAAGC TGATCGCATG GTCGGCGGAC
CGCAAGGGCT CGGAATATTT CACGGTGCGG CTGCGCGACG CCGCGACGGG GAAGGACCTC
GCCGACGAGG TGCCGGACAC TTCGCCCGGC ATCGCATGGG ACGCGGCGGG CACGAGCTTT
CTCTATACGC AGGTGGATGA CGAACACCGG CCGCTGAAAG TGTTCCGCCA TGTCGTCGGC
ACGGCGGCGA GCGAAGACAC ACTCGTCTAT GAAGAAGAGG ACGAAGGCTT TTTCGTCGGC
GTGGGGAAGA CGCAGAGCGG CAAGTGGCTC GTCATTTCAA GCCATGACCA CCAGACCAGC
GAATGCAGGC TGATCCCCGC CGATGCGCCG GAGACTGCGC CGCTGCTCGT TGCGCCGCGC
GAGGAGGCTG TCGAATACGA TATCGAGCAT GACGAACCGC GAGAACGCTT CCTCATTCTC
ACGAATGCGG ACGGGGCGGA GGACTTCAAG ATCGTTGAGG CGCCCGAGGC GGCGCCCGGA
CGCGAGAACT GGCGCGACTT CGTGCCCCAC CGGCCGGGGA CGCTGGTGCT GCATCATGTG
GCCTATCGCG GGCATCATGT GCGGCTCGAA CGGCGGGACG GGCTGCCGCG CATTGCGGTG
CGGCGGCTTG CGGACGGCGC GGAACATGAG ATCGGCTTCG ACGAGGAAGC CTATGATCTC
AACATGGGCG CGGGCTACGA ATACGACACG ACGCGGCTGC GCTTTTCCTA CAGCTCGATG
ACGACGCCCG CGGAAGTCTA TGATTATGAC GTCGAGACGC GGGAGCGGAC ATTCCGCAAG
CGGCAGGAAG TGCCCTCGGG CCACAACCCG GCCGACTACG AGACAAGGCG GATTTTCGCG
CGCGCCTCGG ACGGCGAGAT GGTGCCGATT TCGCTCGTCC ACCGAAAGGG GCTGAGCCTC
GACGGGAGCG CGCCCTGCCT GCTTTACGGC TATGGCTCTT ACGGGATCAG CATTCCGGCA
TCGTTTTCCA CGACCTGCCT TTCGCTGGTC GATCGCGGCT TCGTCTATGC GATCGCGCAT
ATTCGCGGCG GCAAGGAGAA GGGCTATCGC TGGTATACGG ACGGGAAGCT CAACAAGAAG
CGCAACACCT TCACCGATTT CATCGCGGCG GGCGAGCACC TGGCGAAGGA AGGCTTCACG
TCGCGCGGCA ACATCGTGGC GCATGGCGGC AGCGCGGGCG GGATGCTGAT GGGGGCGGTT
TCCAACATGG CGCCCGATCT CTTCAAGGGC ATTCTGGCGG AAGTGCCGTT TGTCGATGTG
CTGGCGACGA TCCTCGATGC GTCGCTGCCG CTGACGCCGC CGGAATGGAA CGAATGGGGC
AACCCGATCG AGAGCAAGGA AGCCTACGAG TACATGGCTT CCTACAGCCC TTACGACAAT
GTGAAGCCCC AAGCCTATCC GCATCTCTTC GCGCTTGGCG GGCTCACCGA TCCGCGCGTG
ACCTATTGGG AGCCGGCGAA GTGGGTGGCG AAGCTGCGGG AGCTCAAGAC CGGCGATGCG
GTGACGCTGC TTCACATCAA CATGGAGGCC GGACATGGCG GCGCTTCCGG CCGCTTCGAG
CGGCTGAAGG AAGTGGCGCG GGTCTATGCC TTTGCGCTGG CGGTGACGGA ACGCGCGTGA
|
|---|
| Protein sequence | MKLTPPAVAP LAPKRPQTDV HHGISRTDDY AWLRDENWRE VMRDPAVLDT DIRAYLDAEN
AYTEAALKPV AELRETLFKE MKGRIKEDDS SVPSPDGAFA YYTRFVEGAQ HPLFCRRPRE
AEAGEEILLD ANKEAEGEAY FKIGDVDHAP THKLIAWSAD RKGSEYFTVR LRDAATGKDL
ADEVPDTSPG IAWDAAGTSF LYTQVDDEHR PLKVFRHVVG TAASEDTLVY EEEDEGFFVG
VGKTQSGKWL VISSHDHQTS ECRLIPADAP ETAPLLVAPR EEAVEYDIEH DEPRERFLIL
TNADGAEDFK IVEAPEAAPG RENWRDFVPH RPGTLVLHHV AYRGHHVRLE RRDGLPRIAV
RRLADGAEHE IGFDEEAYDL NMGAGYEYDT TRLRFSYSSM TTPAEVYDYD VETRERTFRK
RQEVPSGHNP ADYETRRIFA RASDGEMVPI SLVHRKGLSL DGSAPCLLYG YGSYGISIPA
SFSTTCLSLV DRGFVYAIAH IRGGKEKGYR WYTDGKLNKK RNTFTDFIAA GEHLAKEGFT
SRGNIVAHGG SAGGMLMGAV SNMAPDLFKG ILAEVPFVDV LATILDASLP LTPPEWNEWG
NPIESKEAYE YMASYSPYDN VKPQAYPHLF ALGGLTDPRV TYWEPAKWVA KLRELKTGDA
VTLLHINMEA GHGGASGRFE RLKEVARVYA FALAVTERA
|
|---|
| |