| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0401 |
|---|
| Symbol | |
|---|
| ID | 5456169 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 434362 |
|---|
| End bp | 435270 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640875966 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001411681 |
|---|
| Protein GI | 154250857 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.973292 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGGCA GGGCCGGTTC CGGCTCTCCC CCTTCCCGCA TTGCCCGGCA GGCCGCTCTG
GCGTATGCCT CGGCCCCTGA AGCATCAGAA GAGGAAGCCA TGAGCCTCAC GCCCTATCCC
GAGGAAGGTG CCCGCCGTTT CGGGGCGGTG AACTGGCTGG GCGTCTGGAC GCTCTATCTG
AAGGAAGTGC GCCGCTTCTG GAAGGTGATG ACCCAGACCA TCGCCGCGCC CGTCATCACC
ACGCTCCTCT ATCTGGCGAT TTTCGCGCTC GCCATCGGCA AGTTCCGGCC AGATGTGCAT
GGCGTGCCCT TCATCGAGTT CCTGGCGCCG GGCCTCGTCA TGATGACCAT GATCCAGAAT
GCCTTCGCCA ATACCTCGTC CTCGATCCTG ATTTCGAAGA TCCAGGGCAA TATCGTCGAT
GTGCTGATGC CGCCCCTGTC GCCGGGCGAG CTCAATTTCG GCATCGCCAT GGCGGGGGTG
ACGCGCGGGC TGCTGTGCGG CGCCGTGACG ACCATTGCCA TGCTGCCCTT CGTGCATATG
GGCATCGAAC ACGCATGGGC CATCATCTTC TACGCTGTCG GCGCCTCGCT GATGCTGTCG
CTGCTCGGCA TGCTGGGCGG CATCTGGTCG GAGAAGTTCG ACCATCTGCA GGCGGTGACG
AACTTCGTCA TCCTGCCGCT GACCTTCCTT TCGGGCACCT TCTATTCGGT GACGCAACTC
CCCGATCTCG CCCATGAAGT GACGAAGTGG AACCCGGTTT TCTACCTGAT CGACGGCTTC
CGCTATGGCG TCACCGGCCA TGCCGACGGA TCGCTGGCAA CGGGCGTCGC GCTCGTGCTG
GGGATCAACC TGGCGCTCTG GGTGATCTGC CACATGCTGT TCCGCACCGG CTACCGGCTG
AAGGCGTGA
|
|---|
| Protein sequence | MGGRAGSGSP PSRIARQAAL AYASAPEASE EEAMSLTPYP EEGARRFGAV NWLGVWTLYL
KEVRRFWKVM TQTIAAPVIT TLLYLAIFAL AIGKFRPDVH GVPFIEFLAP GLVMMTMIQN
AFANTSSSIL ISKIQGNIVD VLMPPLSPGE LNFGIAMAGV TRGLLCGAVT TIAMLPFVHM
GIEHAWAIIF YAVGASLMLS LLGMLGGIWS EKFDHLQAVT NFVILPLTFL SGTFYSVTQL
PDLAHEVTKW NPVFYLIDGF RYGVTGHADG SLATGVALVL GINLALWVIC HMLFRTGYRL
KA
|
|---|
| |