| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0384 |
|---|
| Symbol | |
|---|
| ID | 5453815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 412966 |
|---|
| End bp | 414813 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640875949 |
|---|
| Product | surface antigen (D15) |
|---|
| Protein accession | YP_001411664 |
|---|
| Protein GI | 154250840 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0729] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGGCG TATCGCGGCG CGCACTGGCC ATGCTCCTGG CGCTGGGAGC CGGCGCGCTC
TGGCTTGAGC CGACGGCGAC GCGCGCGGCG GACGAGGACG AGGCTTCGGC CTATTCATGG
GACCGGACAG AGGCGGGGCT CGACTTCACC ACCGAGGTGC GCGGGCGGCG GATACCCGAT
TATCTGCGCG ACCTGCTGGA GGATGCGCGC CAGGTCCGGC CCGATGTTCA GGACGGGCCG
CCGCCGCCGA CAACGCTGTC GCAATTGCGC CGCCGCGCGG CCGAGGACGC CAAGCGGCTG
GAAGAGGTGC TGGCCTCCGA GGCTTACTAC AATGGCAGCG TCGCGCATTC GGTACGGCAG
GCGGCGGGCG GCTCGTTCGA GGTGGTCTAT TTCGTGATCC TCGGCGAGCG CAGCATGATC
CGGAATTTCG ACATTGTTTA CAGCGGGCAC CCGGAGGGCG GCGAAGGACT GCCGCGAACG
GGCGCGGAAC TCGGGCTCGA ACCCGGCAAG GCGGCGCGGG CGGAGCGCAT CATCGAGCTG
ACCGGCGAGG CGGTGCGGCG GCTCCACAAT AATGGCTATC CGAACGGCAA GCTCGACCGG
CGGCGCGTCA CCGTCAACCT GACGTCGAGC GAGGCGGATG TCACGCTCTA CATGACGGCG
GGAGAACGCT ACCGCTTCGG ACCTGTGCTG GTGACGAATG AGGGCCGGAC GGACCCTGAT
TATGTGCGGC AGCTGACGAC ATTCGAGGGC GGCGAGGTCT ATGACCGCAG CGAAGTGGAC
AAGACGACGG AGGCGCTGCG CGACACGGGA CTTTTCAGCG GCATCTCGAT TTCATCCGCC
GAGCCGGAAG ATGGAACGCT GCCGCAGCGG ATCGAGCTGA CGGAGCGGGC GCCGCGCACG
GTGCGGCTCG GCGCAAGATG GTCTTCGAGC GAGGGGCCCG GCGTGCGCGG GAGCTGGGAG
CACCGCAATC TCTTCGGACG GGCGGAGCGG CTGACGCTCG GGCTGACCAT CGCGCAGATA
TTGCAGGCGG CGACGGCGGA TTTCCGCAAG CCGGATTTCC TGCGGCCGGA CCAGAGCCTG
CTGGCGAGCT TCGAGATCGC GCATGAGGAA AGCGACGCCT ATGACGAAAA CCGCGTGAAG
ACCGGCGTGT CGCTGGAGCG CGTGCTGAGC GAGCGGTGGA CGGGGACGGC GGGCGTGACC
TTTCAGGTGA CGGAGACGGA AGATTCCAAC GGGCGCATCA CCTATCAGCT TTTCGGCGTG
CCGGTGACGC TGCGCTATGA CAGTTCCAAC GATCTGCTCA ATCCGACGGA GGGCATAAGG
GCGACGCTCG GCGCGACGCC CTATTTCGGC AGCAGCGACG GCAGACCGAC GACCTTCACC
AAGCTCGAAG CATCGGGGGC GACCTATCTG AGCCTCGCCG ACGAACTGGT GCTCGCTCTT
CGCGGACGCT ATGGCCTGAT CGCGGCGGAG GAAACGGTGG ATGTTCCGGG CTCTACGCGG
TTCTATGCAG GCGGGGGCGG CTCCGTGCGC GGCTATGGCT ACCAGATGGC CGGACCGCTC
GACGCGCAGG GCGATCCGAC GGGCGGACGC TCCGTACTCG AAGCAAATGT GGAAGCGCGC
TACCGGGCGA CGGAAACGAT CGGCCTCGTC GCCTTTATCG ATGGCGGCCA GGCCTTCGAG
AATATGACCC CCTCGCTCGG CGACCCGCTG CTCTGGGGCG CGGGGCTGGG CGTGCGCTAC
TACACGCCTA TCGGGCCGGT GCGCGCGGAT GTCGCGATAC CGCTGAACAA GCGGCAGGGC
GTGGATGATG ATTTCCAGAT CTATGTGTCG CTGGGGCAGG CTTTCTGA
|
|---|
| Protein sequence | MRGVSRRALA MLLALGAGAL WLEPTATRAA DEDEASAYSW DRTEAGLDFT TEVRGRRIPD
YLRDLLEDAR QVRPDVQDGP PPPTTLSQLR RRAAEDAKRL EEVLASEAYY NGSVAHSVRQ
AAGGSFEVVY FVILGERSMI RNFDIVYSGH PEGGEGLPRT GAELGLEPGK AARAERIIEL
TGEAVRRLHN NGYPNGKLDR RRVTVNLTSS EADVTLYMTA GERYRFGPVL VTNEGRTDPD
YVRQLTTFEG GEVYDRSEVD KTTEALRDTG LFSGISISSA EPEDGTLPQR IELTERAPRT
VRLGARWSSS EGPGVRGSWE HRNLFGRAER LTLGLTIAQI LQAATADFRK PDFLRPDQSL
LASFEIAHEE SDAYDENRVK TGVSLERVLS ERWTGTAGVT FQVTETEDSN GRITYQLFGV
PVTLRYDSSN DLLNPTEGIR ATLGATPYFG SSDGRPTTFT KLEASGATYL SLADELVLAL
RGRYGLIAAE ETVDVPGSTR FYAGGGGSVR GYGYQMAGPL DAQGDPTGGR SVLEANVEAR
YRATETIGLV AFIDGGQAFE NMTPSLGDPL LWGAGLGVRY YTPIGPVRAD VAIPLNKRQG
VDDDFQIYVS LGQAF
|
|---|
| |