| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0240 |
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| Symbol | |
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| ID | 5455212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 259556 |
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| End bp | 260686 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640875803 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_001411520 |
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| Protein GI | 154250696 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACTGA AAAAAATCCC GGAAGCCGCC CGGCGGTTGC TTGAGGATGC AAAGACCGTC
CTTTCGCGCG TGCCCACCCG AATGATCACG GCAGCTCTGG GCGCCATTAT CGTCCTCGCC
GCCTTGCTCC TGTTCTATCT GCGTCCACCC ACAAGCATGG AGGAAGCGCC TGAAGCGGTT
ACGTTCTTCC AGATCGGAAC CGGGAGCGCG GGCGATGAGT ATTTCGCCGT GGGGGAGCGG
CTGGCGGCAG CGATCGGGCG CCCGCCTGGA ACGCCTCGAT GTGAACGCGG TATGCCTTGC
GGCGTCGCCG GATTACTTGC AGTGGCGCGA TCCTCAGCCG GACCTGTCGC CAATGTCCGC
GCTGTGAGCG CAGGACTTTT CGATTCCGCC CTTGTCGCCG CGCCCATTCT AGAACTCGCA
GCGCGGGGCG AGACACCGTT CAAGGGCGAG AAGCCGGTGA CCAATTTGCG CGCCATTGCC
GGCGTGTACC GTGAAGCGCT CTATCTTGTT GCAAGTCGCA ACGCCAATAT CGGTTCTGTC
GCGGATTTGG AGAATATGCG CGTCTCGGTC GGTCCGCCTG GCTCGGGCAC TCGGGAAGCG
GCATTGCCTG TGCTCGCGGT CCATAGTCTC GGCCGCCGGA CTGTACAGAT TTCCGAATAC
GACACAGAGA CCGCGATCGA CCTGACCCTG CGCGGCCAGC TCGACGCCTT CTTCCTGGTC
GATGCCTTGC CGTCTACTGA AATCGCCAGC CTTGCCGACC GAGGTTCGAT CAACATCGTC
CCTGTAGACG GGGAGGAAGT TCGGCAGCTT ACGCGTCCCG GCGAAAGCTT TCAGCCGCTT
CTGATCCCGG CCGACCTTTA TCGTTTCGTC CCTGAGACCC AAACGCTTGG TGTATCCATG
GTCTGGATCG TCAATGAAGA GGCCGACCCG GATCTCATCC ACGACATTAC CGAAGCGCTT
TTTTCCCCAA ACAATCGTCC ATTGCTTTCG AGTCCGGTTT TGCCGGGGCT GCTGCCGGGA
GAAGAAGGAG AGCGGGCGAA ATTCGCAACG TCGTCCATTC CCGTTCCCCT CCATGAGGGA
GCAAAGCGCT ACTACCGTGA ACAGGGATTG ACCGTGGAAG AGGAGCCCTA A
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| Protein sequence | MELKKIPEAA RRLLEDAKTV LSRVPTRMIT AALGAIIVLA ALLLFYLRPP TSMEEAPEAV
TFFQIGTGSA GDEYFAVGER LAAAIGRPPG TPRCERGMPC GVAGLLAVAR SSAGPVANVR
AVSAGLFDSA LVAAPILELA ARGETPFKGE KPVTNLRAIA GVYREALYLV ASRNANIGSV
ADLENMRVSV GPPGSGTREA ALPVLAVHSL GRRTVQISEY DTETAIDLTL RGQLDAFFLV
DALPSTEIAS LADRGSINIV PVDGEEVRQL TRPGESFQPL LIPADLYRFV PETQTLGVSM
VWIVNEEADP DLIHDITEAL FSPNNRPLLS SPVLPGLLPG EEGERAKFAT SSIPVPLHEG
AKRYYREQGL TVEEEP
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