| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0231 |
|---|
| Symbol | |
|---|
| ID | 5455295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 249995 |
|---|
| End bp | 250558 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640875794 |
|---|
| Product | peptidase A24A prepilin type IV |
|---|
| Protein accession | YP_001411511 |
|---|
| Protein GI | 154250687 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4960] Flp pilus assembly protein, protease CpaA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCCGC TTCGCGCGCG GGGCTGCATC GCCCTCCGGA AAAACTGGGC ATCGTCCGTG
ATGAACATGC TTCTCCTCGT TGTCTTTCCT CTCGCCATGA TCTTCGGCGC CTTGTGGGAT
CTGACGACGA TGACCATTCC GAACCTTCTC TCCATCGCGC TCGTCGCGAT GTTCGCATTA
CTTGTGCCCT TCGTCGGACT GGCCCTTCAG GACATTGCAC TTCACGTGGC GGCTGGCCTC
GTCATGCTCG CTCTCGGCAT GGGCCTTTTT GCGCTTGGCT GGATCGGTGG CGGCGATGCG
AAGTTCGTGT CCGCGATTGC GCTGTGGATC GGCTGGTCCG AGCTGCTCGG CTACCTGCTT
CTCGCTTCGA TTTTCGGAGG GGTCTTGACC CTTCTTCTGC TCGGCTTTCG CAAGATGCCG
CTGCCGTCCT TCATGCACCG TGAGTGGCTT CTGCGCCTCC ATGATCGCAA GTCCGGCATC
CCCTATGGCG TTGCGCTCGC CGCCGCAGCC CTTGTGATGT TCGAGCGGAC CGTCTGGTTC
AAATTTGCGG CGCATGCCGC GTGA
|
|---|
| Protein sequence | MGPLRARGCI ALRKNWASSV MNMLLLVVFP LAMIFGALWD LTTMTIPNLL SIALVAMFAL
LVPFVGLALQ DIALHVAAGL VMLALGMGLF ALGWIGGGDA KFVSAIALWI GWSELLGYLL
LASIFGGVLT LLLLGFRKMP LPSFMHREWL LRLHDRKSGI PYGVALAAAA LVMFERTVWF
KFAAHAA
|
|---|
| |