| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0003 |
|---|
| Symbol | |
|---|
| ID | 5453797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1568 |
|---|
| End bp | 3127 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640875562 |
|---|
| Product | chromosomal replication initiator protein DnaA |
|---|
| Protein accession | YP_001411283 |
|---|
| Protein GI | 154250459 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0593] ATPase involved in DNA replication initiation |
|---|
| TIGRFAM ID | [TIGR00362] chromosomal replication initiator protein DnaA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000000118183 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 1.2245600000000001e-24 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAGGCATG AAGTTTTGAA CGAGGAAGAT ATGGCGCCAT CTCCGGCTGA AAGGCGGCCG
CAGGATGTTG CGAAAGCCGC GCGGCTTTCG GAAGAAGCAC CTGGTGCCGC TCTGCGGCGC
GCCCCCGCGA TGAGCCTTGC GGAACAATGG CGGCGCGTGC GCGCGCGGCT TCAGGCGGAA
CTGGGCGAGG CGACCTTCAA CAGCTGGTTC AAGCAGGTGG AGATGAACGG TGTGTCCGAG
GGCCGCGTCA TGCTCTCCGT GCCGACGCGC TTCATCCGCA ACTGGATCGT CTCCCATTAC
GCCGATCGTC TCGCGAAGCT CTGGGCCGAT GAGGATCCGT CCTTCTGCCG CGTCGATGTG
CTGGTCGGGG CCGAGGCGAG GACGGAGGAT GCCGCGCCCG TGAGCGATGC CGCACCGGTC
GAGACTGCGG CCGCGCAGGC TCCTTCCGCC ATCCGTGCCG ATACGCCGCT GGCGACCGCG
GTGCCGCATG GTTTCGAGGA TGCAGGCGTC GGCGCGCCGC TCGATCCGCG CTTCACCTTC
GATGCTTTCG TGGTCGGCAA GTCGAACGAG CTCGCGCATG CCGCCGCGCG CCGCGTCGCC
GAAGCAACGG ACGTTACCTT CAATCCGCTC TTCCTTTATG GCGGCGTCGG CCTCGGCAAG
ACGCATCTCA TGCATGCGAT CGCGTGGGAA ATCCGCAAGC GCCAGCCGGA GCGCAAGGTG
CTTTATCTGT CCGCCGAAAA ATTCATGTAC CAGTTCGTGC GGGCGCTGCG CTTCAAGGAC
ACGATGGCCT TCAAGCAGCA GTTCCGTTCC GTCGATGTGT TGATGATCGA CGACGTGCAG
TTCATCTCCG GCAAGGATTC GACGCAGGAA GAGTTCTTCC ACACCTTCAA CGCATTGATC
GACCATAACC GTCAGGTCAT CATCTCCGCC GACCGCTCGC CTTCCGATCT CGAAGGCATC
GAGGAGCGCA TCCGCTCGCG TCTCGGCTGG GGCCTTGCCG CCGACATCCA TCCGACCGAT
TACGAGCTGC GTCTCGGCAT CCTCCAGGCG AAAGCCGACG AGATGATGCA GAGGAACGGC
CCGGTTTCGA TCCCGCCCGG CGTTCTCGAA TTCCTCGCGC ACCGCATCGT CTCGAATGTG
CGCGAGCTGG AAGGGGCGCT GAAGCGCGTC GTCGCCTATG CCTCGCTGGT CGGCCGTCCG
ATCACCCTCG ACATGTCGCA GGAAGTGCTG CGCGATCTGC TGCGCTCCAA CGATCGCAAG
ATCACCATCG AGGAAATCCA GCGCCGCGTG GCGGAGTACT ACAACGTCCG CCTCGCCGAC
ATGCTGTCCG CCCGCCGCGC CCGCGCCGTC GCGCGTCCCC GTCAGGTCGC CATGTATCTG
TCGAAGCAGC TTACCACCCG TTCGCTGCCC GAGATCGGCC GCAAGTTCGG CGGCCGCGAT
CACACCACGG TCATCCATGC CGTGCGCAAG ATCGACGAGC TTTGCCTGGT CGATTCAGGC
ATCGAGGAGG ATGTCGATCT GCTCCGCCGC ATGCTTGAGG GCGGCCACGG GCCGAATTGA
|
|---|
| Protein sequence | MRHEVLNEED MAPSPAERRP QDVAKAARLS EEAPGAALRR APAMSLAEQW RRVRARLQAE
LGEATFNSWF KQVEMNGVSE GRVMLSVPTR FIRNWIVSHY ADRLAKLWAD EDPSFCRVDV
LVGAEARTED AAPVSDAAPV ETAAAQAPSA IRADTPLATA VPHGFEDAGV GAPLDPRFTF
DAFVVGKSNE LAHAAARRVA EATDVTFNPL FLYGGVGLGK THLMHAIAWE IRKRQPERKV
LYLSAEKFMY QFVRALRFKD TMAFKQQFRS VDVLMIDDVQ FISGKDSTQE EFFHTFNALI
DHNRQVIISA DRSPSDLEGI EERIRSRLGW GLAADIHPTD YELRLGILQA KADEMMQRNG
PVSIPPGVLE FLAHRIVSNV RELEGALKRV VAYASLVGRP ITLDMSQEVL RDLLRSNDRK
ITIEEIQRRV AEYYNVRLAD MLSARRARAV ARPRQVAMYL SKQLTTRSLP EIGRKFGGRD
HTTVIHAVRK IDELCLVDSG IEEDVDLLRR MLEGGHGPN
|
|---|
| |