| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1781 |
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| Symbol | |
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| ID | 5452312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Fervidobacterium nodosum Rt17-B1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009718 |
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| Strand | - |
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| Start bp | 1932372 |
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| End bp | 1937324 |
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| Gene Length | 4953 bp |
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| Protein Length | 1650 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640875550 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_001411271 |
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| Protein GI | 154250446 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.496749 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTCTT CTTTCAAAAG AAAAATTGCA AGTGTGAACG TTAGAGTAGC TTCACCCGAA
GTTATTAGAA ACTGGTCAAA CGGTGAAGTA AAGAAAGCTG AGACAATAAA TTACCGTACC
TTCAAACCAG AAAGAGATGG TCTCTTCTGT GAGAGGATAT TTGGACCTGT AAAAGACTAC
GAATGCGCTT GTGGAAAGTA CAGTGGAAAG AAATATGAAG GTACAGTTTG TGAAAAATGT
GGTGTTAAAG TTGAATCAAA AGACGCACGC CGAAGGAGAT TTGGACATAT AGAACTTGCT
GCGCCTGTCA CACACGTATG GTACTTAAAA AATTCTCCAA GTGTCATAGC GACTCTCCTC
GACATGACCG TAAAAGATAT AGAGACAATT GTCTATTTTG GAAGTAGAAG AGTTAATGAA
CGTGTTGTTA TCGTTACCGA TCCCAAAAAT ACACCTTTCA TAAAAGGTTC TATATTAAAT
CAAACTGAAT ATGAAATTTA CGCACAAAAG TGGGATTTTG AAGTCTCACC AGCGTATATA
GTTAAAGAAC CACGTTCACC TTTAGTATCT GATATAGATG GTGAAGTACA CATAAAACAC
GAAAAAACAC ACACAGATAG AGAGCTTTAC TGGATAGTTG TTAAAAACAT CTCTCGAACC
GAATTGAAAG TTTACACTGG AATGGTACTA AACTTCAAAG ACAACGACCA AGTCAATCAA
GGAGATGAAA TTGTATCTGA AAAAAGAGTC GAAGCAATAT TTGCACCATT TGATGGTACC
GTTGAAGTAG ATGAGATTTC AGAAACTATA ACTATAAATC CATTGCCAAC AAGCAAAAAT
AATCCAATAA CGTTTTCACT TCCGTACGGT GTTAGAGCTT TGGTAAAAAA CAATGAAAAA
GTTAAGAAAG GGCAGCAACT TACAACAGAA ACCATTCTCA ACTCTATTGT TGCTCCAGTC
TCAGGTACAA TTAGATACAG CAAACAACTT AATTTAAGAC CTTTAGAAAA CGGATTATAT
GAAGTTCTCA CAAATGGAGT TATATACATT GAAAACGTTC AAAATATAAA ACAATACCCT
GTGTTTGAAG GAGCACCTAT TCAAGTTGAA GACGGTCAAA TGGTAAAAGC TGGCGATATA
CTCGCCGATA GATTTTTATT TGAAGAAGAG AAATTAACTA TCGAAGAATA TAAACTCTTT
AGCGAATATT ATCCTGGAAT GTTTGTAGTT GAAGAACAAA TAGAAAACGA TAAACCAATA
ATGGTCATAA CCGATATCGA TCCTTCTGTG TCAGAGGAAA CGGGAATAAA AAAAGGACAA
GTTATCACTC AACAAGATTA CGAAGCATAC TCGAGAATAT ACCCTGGTAA GATAGAAGCA
GAAACAGGTG CAATGGCGAT CAAAAAACTT CTTGAAAAAA TTGACCTTGA AGTAATGAAA
GCAGAAATCG AAGCAGAACT TAAGAAAATA CCAAAGAGCA GTGTCAGGGC AAAGAAATTA
CTCAAAAAAA TGAAAATAGT TAAAGACTTG ATAGATAGTC AAACAAAACC TGAGTGGATG
GTTCTTGAAG CTTTACCAGT AGTTCCACCA GAAATAAGAC CTATGATTCA AATAGATGGT
GGTAGATTCG CAACAACGGA TCTTAACGAT CTATACAGAA GAGTCATAAT GAGAAATAAC
AGACTTAAGA AACTTCTTGA AATGAATGCG CCAGAGGTTA TCGTAAGAAA CGAAAAAAGA
ATGTTACAAG AAGCTGTTGA TAACCTCATT TTCAATGGAA AAATTGGAAA AGCTTACGTT
GACAGAAACG GAAGACAACT AAAATCATTG ACAGACCTTA TCCGTGGAAA AAAAGGAAGG
TTCAGAAGGA ACCTTCTTGG TAAACGTGTT GACTATTCAG GACGCGCGGT TATCGTTGTA
GGTCCACATT TGAAAATCCA CGAATGTGGT TTACCAAAGA AGATGGCACT CGAACTCTTT
GAACCATTTG TTATTGCAGA GCTTTCAAAA GAAGAAAACA CAGAAGCACC ACAAACAAAA
GTCAAAAAAT ATAGGAAAGA ACTCCAAAGA GAAGATCCAA AAGCTTGGGA AAAACTCGAA
AAAGTTATAC AAGGAAGAGT TGTTTTACTT AACAGAGCGC CAACACTACA CAGGATGTCA
ATTCAAGCCT TCGAGCCAAA ATTAATAGAG GGCAACGCTA TACAACTTCA CCCATTGGTA
TGTCCGCCAT TCAACGCTGA CTTTGATGGT GACCAAATGG CGGTACATCT ACCATTATCG
CCAGCAGCGC AAGCAGAAGC AAGATTATTA ATGCTTTCAA GGTACAACAT TATATCACCT
GCTCATGGTA AACCTATTTC AATGCCTGGA AAAGACATTG TTGCTGGTGT TTACTACTTG
ACGATGGTTG ATAAGAACTA CGATAAAATA GAGCCGGAAA ATATTAAATG GAAGTTTGCA
AATCCAGAAG AAGCCGAACT TGCTTACGAA TTTGGTTTTA TCAAACTACA TGAACCAATC
ATTATAAAAA TCAATGATAA AGCAATAAAA ACAACTTTTG GAAGGGTCAT ATTCAATAGC
ATACTTCCAG AAGAACTTAG AGATTACAAC AAAACATTTG GTAAAAATGG CATAAAAGAC
GTTGTTTACA AAACATTTAA AACACATGGT ATCGACAGAA CAGCTGATCT ACTTGATAGC
ATAAAAGATC TTGGATTCCA TTATGCAACT ATCTCAGGAC TTACTATAAG TCTTAAAGAC
TTTATGATTT CTCCAAAGAA AAATGAGATT ATAACAAATG CAATGAAAAA AATAGAGTAT
ATCGAAAAGC TCTATGATGA TGGCTTGCTA AGTGATGAGG AAAAGTATAA AGAAACAATA
AAAATATGGA CAGAAACAAC AAACTTAGTC CAGGAAGAAA CATACAGATA CCTTGGAGAA
AATCCATTCA ACCCCGTTTA CATAATGGTT GACTCTGGTG CAAGAGGTAA CAAAGACCAA
CTCAAACAAC TATCAGGTAT GAGAGGTCTC ATGGCTGACC CATCAGGTAG AACTATCGAA
ATACCAATCA TTTCAAACTT CCGTGAAGGT CTATCGGTTC TTGAATTTTT CATCAGTACC
CATGGTGCAA GAAAGGGTTC CGCTGACACA GCATTGAGAA CAAGTTCAGC AGGTTACTTA
ACAAGAAGAC TTGTTGATGT TGTACAAAGC GTTGTTGTAA CAGAACCAGA TTGTGGTACA
CACGAAGGTG TTCGTGCGAC ACTTCTTAAG AGTTCTGACA ATTTTGTTGT TGAAAAAATA
GAGGACTTCA TCTTTGGTCG CGTACTCGCA AAAGATATTT ATGAACCCGG TACAGGAAAT
ATATTAGTCA ACCCCAACAC CAACAAGTCT TACACAAGAG ATACCGTAAT TCTTGATGAG
GATGCAAAAT TCTTATCAAA TTACAAAAAG AGAGTAAATG TTGTCGAAGA AAGTATATTA
GATCTCTCAG TTGGAAACAT TCCAGAAGTT TATGCTGAAC TTGCAGAAGA CATTGACACT
CCATCAGGGC TAATACCATC TGAAACAGAA ATCGATTGGG ATGTTGTAAG AAAACTAAGA
GACGCAGGTA TAAAGAACGT AAAAATTAAG CTTTATCCGA TAGTCGGTTC TGTAATATCA
GAAGAGATAG TTTGGGATAA AGATAGGAAA AAGCAGATAG CCGTTGAAGA AGAGCAAGTT
GACGTTGCAC TTGCTAAATT ACTTGAAGAA AACAATATAG ACAGCGTTTA TGTAAGACCA
GAAATATATG TCAGGTCAGT ACTCACATGT GAATCAGAAC ATGGCGTTTG TGCAAAATGT
TACGGATTAG ACCTTTCAAA CCACAAAGTA GTTACAGTTG GTGAATCAGT TGGTATAATT
GCTGCTCAAT CAATCGGTGA ACCAGGAACA CAGCTCACAA TGCGTACATT CCATACTGGT
GGTATTGCAA CTACAGCAGA TATCACACAA GGTTTACCAA GGGTTGAGGA ATTATTTGAG
GCAAGAAAGA AAACAAAAGA CCCAGAAGGT ATATTCTCAA AGGTAAAAGG TACAGTTGTT
GATATTTCAA ATGATGAACC AAAGAAAATT TATATACAAG ATGAACTTGG TGGTATTCAT
GAATACGAAG TACCTTCAAG AGTAAGAGTT AATGTTACAG TTGGTCAAAA AGTATTACCT
GGTCAATCGC TAACAAGTGG TTCTCTCAAA GTTAGAAAAA TTCTGGAAGA ACTTGGACCA
GAAGAAACAG CAACGTATTT ACTCAAAGAA ATAAAGAGAG TCTATGTACA ACAAGGTGTT
GACATTCACG ACAAACACTT CGAACTTATA ATTAGGCAAA TGTTGAATAA AGCAGAAGTC
ATAGATTCCG GCGACACAGA ATTCTTACCA GGTGACCTTG TACCGATAAG CTTGCTTAAC
AAGGTTAACA GGGAAATAAT GGAAGGCAAT GCAAAAGTTG AAATGAACAG AAAGAAAATT
ATCGGTAGAG AACTTGCCAA ACATATCATT GTGAAAAATG AAGATGGAGA AATTGTAGAA
CTTGCCGCTG AAGGTGAAGA GGTCACAGAA GAACTCCTTG AAAAACTTAT TGAATACGGA
ATAAAAGAAG TAGTTATCAT GAATCACGAT AAAGAAAAAG AAGTTTATCA GATCCTTCCA
AAAGAAACTG TAAAATACAG AAGAAGACTA TTGAGAATTA CTCAAGCATC GCTCGAGTAC
GAAGGCTGGT TAAGTGCGGC AAGCTTCCAG CAAACACAAC AAGTTCTAAC AGATGCTGCA
ATTAAAGGCG CTGTAGATTA TCTAAAAGGT TTGAAAGAAA ACGTAATAGT CGGTCAACTA
ATACCAGCAG GTACAGGATT CGATATATTC TCATCCGTTC AATACGAAGA AACACCAAGG
CTTGCAAAAG AAGAAAAAGA AAAATTCGCA TGA
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| Protein sequence | MSSSFKRKIA SVNVRVASPE VIRNWSNGEV KKAETINYRT FKPERDGLFC ERIFGPVKDY
ECACGKYSGK KYEGTVCEKC GVKVESKDAR RRRFGHIELA APVTHVWYLK NSPSVIATLL
DMTVKDIETI VYFGSRRVNE RVVIVTDPKN TPFIKGSILN QTEYEIYAQK WDFEVSPAYI
VKEPRSPLVS DIDGEVHIKH EKTHTDRELY WIVVKNISRT ELKVYTGMVL NFKDNDQVNQ
GDEIVSEKRV EAIFAPFDGT VEVDEISETI TINPLPTSKN NPITFSLPYG VRALVKNNEK
VKKGQQLTTE TILNSIVAPV SGTIRYSKQL NLRPLENGLY EVLTNGVIYI ENVQNIKQYP
VFEGAPIQVE DGQMVKAGDI LADRFLFEEE KLTIEEYKLF SEYYPGMFVV EEQIENDKPI
MVITDIDPSV SEETGIKKGQ VITQQDYEAY SRIYPGKIEA ETGAMAIKKL LEKIDLEVMK
AEIEAELKKI PKSSVRAKKL LKKMKIVKDL IDSQTKPEWM VLEALPVVPP EIRPMIQIDG
GRFATTDLND LYRRVIMRNN RLKKLLEMNA PEVIVRNEKR MLQEAVDNLI FNGKIGKAYV
DRNGRQLKSL TDLIRGKKGR FRRNLLGKRV DYSGRAVIVV GPHLKIHECG LPKKMALELF
EPFVIAELSK EENTEAPQTK VKKYRKELQR EDPKAWEKLE KVIQGRVVLL NRAPTLHRMS
IQAFEPKLIE GNAIQLHPLV CPPFNADFDG DQMAVHLPLS PAAQAEARLL MLSRYNIISP
AHGKPISMPG KDIVAGVYYL TMVDKNYDKI EPENIKWKFA NPEEAELAYE FGFIKLHEPI
IIKINDKAIK TTFGRVIFNS ILPEELRDYN KTFGKNGIKD VVYKTFKTHG IDRTADLLDS
IKDLGFHYAT ISGLTISLKD FMISPKKNEI ITNAMKKIEY IEKLYDDGLL SDEEKYKETI
KIWTETTNLV QEETYRYLGE NPFNPVYIMV DSGARGNKDQ LKQLSGMRGL MADPSGRTIE
IPIISNFREG LSVLEFFIST HGARKGSADT ALRTSSAGYL TRRLVDVVQS VVVTEPDCGT
HEGVRATLLK SSDNFVVEKI EDFIFGRVLA KDIYEPGTGN ILVNPNTNKS YTRDTVILDE
DAKFLSNYKK RVNVVEESIL DLSVGNIPEV YAELAEDIDT PSGLIPSETE IDWDVVRKLR
DAGIKNVKIK LYPIVGSVIS EEIVWDKDRK KQIAVEEEQV DVALAKLLEE NNIDSVYVRP
EIYVRSVLTC ESEHGVCAKC YGLDLSNHKV VTVGESVGII AAQSIGEPGT QLTMRTFHTG
GIATTADITQ GLPRVEELFE ARKKTKDPEG IFSKVKGTVV DISNDEPKKI YIQDELGGIH
EYEVPSRVRV NVTVGQKVLP GQSLTSGSLK VRKILEELGP EETATYLLKE IKRVYVQQGV
DIHDKHFELI IRQMLNKAEV IDSGDTEFLP GDLVPISLLN KVNREIMEGN AKVEMNRKKI
IGRELAKHII VKNEDGEIVE LAAEGEEVTE ELLEKLIEYG IKEVVIMNHD KEKEVYQILP
KETVKYRRRL LRITQASLEY EGWLSAASFQ QTQQVLTDAA IKGAVDYLKG LKENVIVGQL
IPAGTGFDIF SSVQYEETPR LAKEEKEKFA
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