| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1758 |
|---|
| Symbol | |
|---|
| ID | 5452068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 1912663 |
|---|
| End bp | 1915434 |
|---|
| Gene Length | 2772 bp |
|---|
| Protein Length | 923 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640875526 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001411248 |
|---|
| Protein GI | 154250423 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0298982 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATTCTTT TGTCAAACGA AATTTTGATT GTACCGAGTG AAAAAGAAAC TAACATAGAA
GGTTACTATT ACATACCTGA TTACGATGTC TTACCATATG AAAATCTAAG ACCTTCCTGG
TATGTCCGTT CAAGAAGAAT TTACGCGCTT TATCTTGCTG TCCAGGGTAA ACTCAAAGGT
ATTGCAACGT TGAGGGCTTT ACTCCATTAT GTTATGAAAC CTTCAGAGTT TAAGAAGTAT
ATCTATCATT TGAAACCTGG TGATGAGCTC TCGTCACCAG AAGAGTTATT TGCAAAACTT
GGTTATGAAA GGGTTTTTAA TGTACGTGAA GGTGGCACAT TTTCCATTCG TGGCGAAATA
ATAGATTACC TTGGACCAGA TAATATGCCC GTGAGAATTG AATTGTACGG TAATTTAATT
GAAGAAATTA GAAGGTTTGA TTTGAAAACA CAACGAAGCC AAGAAAAGCT TGAAAGTGCG
TTACTTTTGC CGGCAAGAGA ATTTGTTGTT GAAGAATTCA AAAAAATAGA AAAATTAGAG
CCTATAGATG AGCAGTTAAC TGGAAAATAC TGCGATGGTA CGTTTTTGGA TTACAATGTT
AATTTTTATA TATACAATAA GAAATCTGTT ATTGAGCATT TTTCATCTTT TGAAAGGGAA
TTGAGAAATT CTATACAGGA TATATATCAA AAAGACGAAT ACAAAAAATT TGGAATAATA
AGCTACGAAG ATATTCTTTC GAAGGCTCAA GAAATTGAAC TAAAACAGCC AATAACTCAA
GAAAAGTTAT TGATTGAAGA AGAGTATATT CCTTCAGCTC CTGTTTTATC TGAAGATGAG
CTTCAGGTTG GTGATTTGGT AGTTCACAAG AGATATGGAA TTGCCCGCTT TACAGAAATA
AAGAAAGTTG AAACGATTTC TGGTGCAAAG GAGTTTCTTG TTTTGAATTT TGCAGATTCG
ACTTTGTACG TTCCAATAGA GAGAATCGAT TTGATAGATA AATATATTGG CGATGATGTA
AATGTTAAGT TGGATTCTTT AAAGAAAGGA ACATGGTCAA AGAAGGTATC AAAAGCGAAA
AGAAATATAG AGACGATTGT AAGGGATATG CTTTTAATAC ATTACATTAG AAATAATACA
ACTGGAGTTG CTTTGCCTGG TGACTCTGAG CTCGAAAGTG AGTTTGCGAA GACGTTTCCG
TATATAGAAA CGGAGGACCA GTTAAAAGCT ATACAAGATG TTTTTGAAGA TCTTGTAAGT
GGAAAACCTA TGGATAGGTT ACTTGTTGGT GACGCCGGAT ATGGAAAGAC GGAAGTAGCA
ATTAGAGCTA TATTTCGAGC AATTGTCTCA GGTAAACAAG CGGCATTGTT AGCTCCAACA
ACTGTTCTTG CAAGACAACA TTACGAAAAT ATCGCTGAAA GGTTTAAGCC GTTCGGTATA
AGAGTTGCGC TGCTTGATAG GTTTGTGACA AAGAAGGAAA GAGAAGAAAT ATTACGCGAT
GTGAAAAATG GAAAGATAGA CTTACTCATT GGCACGCATA GTATCTTAAA TAACGTGGTT
TTCGCTGATT TAGGGCTTGT TGTAATTGAC GAAGAGCAAA AATTTGGTGT TGAACAGAAA
GAGAAGTTCA AAAAGCTTAG AGTAAATGTC CATGTTTTAT CTATGAGTGC TACGCCGATA
CCAAGGACAC TTCACATGGC ACTCTCTGAA TTGAAAGAAT TTTCTGAAAT TAAAACACCT
CCATTTGGAA GAAAGGAAGT GCAGGTACAT ATTGGACCTT TCGACGATAG GATTGTTAGG
ATAGCGATAC TTCGTGAAAT AAACAGAGGA GGACAAGTGA TTTATGTACA CAATAGAGTG
AATACGATAT ACGATGTGTA CGAAAGGTTA AAAGAGCTTC TACCTGAGGT ATCGATAGTC
ATTGGTCACG GTCAACAATC TAAAAGCGAA TTGAAGAGGG CAATCGATAT GTTTTTCCAT
GGTAAGGCAG ATGTTCTTTT GTGCACTACA ATAGTTGAAA ATGGCGTTGA TGTTCCAAAC
GCAAATACGT TGATAGTTGA TGATGCTCAC AGATATGGAC TTGCTCAGTT ATACCAGCTC
AGGGGAAGAG TTGGAAGGAG TGATAAGATA TCTTTTGCGT ACTTTTTCCA TCCAAAGCAT
GTTAACGATA AGGTACTTGA AAGGTTGTAC GCGATAAAGT CTTACGTTGG ACCTGGAAGT
GGATTGAAGA TAGCGATGAG AGATATGGAA ATTCGAGGTA TTGGTGCAGT ATTTGGACTT
GAACAACATG GTTATATTAA CGATATCGGT TTGAATTATT ATCTTGAATT GCTTGATGAA
ACAATAAAAG AAAGCAAAGG TGAATTGATT AGCAAGGTAG ATACGGAGTT AGAAGGTATA
CCTGGTAGTA TAATAATACC AGAAGCCTAT ATATACGATC CCTTCGAACG TATGAGGTTT
TACAGAAGAA TAGCTTCAGC AACAAGTATT GATGAATTAA TGGATATAAA ACTTGAGTTA
GAAGATAGAT TTGGGAAGAT TCCAAACAGT GTCGAAAACC TTTTGAAGTA TGGAATGTTA
CGTGTACTGT TATGGAAAAT GGGAGTTAAA AAGGCAACTA TTGGAGATTC CACGATAGTC
GTTGAATTTA AGAATGGATT TTTTGAAAAA ATTTCTGAAA GGTATATATA CAACGAAAAG
GAAGATAGCT ACATATTTTT CTGTGAGGTC GAAGAGGTAT TGGAAAAGTT CTCAACGGTC
CATGCTAAAT GA
|
|---|
| Protein sequence | MILLSNEILI VPSEKETNIE GYYYIPDYDV LPYENLRPSW YVRSRRIYAL YLAVQGKLKG
IATLRALLHY VMKPSEFKKY IYHLKPGDEL SSPEELFAKL GYERVFNVRE GGTFSIRGEI
IDYLGPDNMP VRIELYGNLI EEIRRFDLKT QRSQEKLESA LLLPAREFVV EEFKKIEKLE
PIDEQLTGKY CDGTFLDYNV NFYIYNKKSV IEHFSSFERE LRNSIQDIYQ KDEYKKFGII
SYEDILSKAQ EIELKQPITQ EKLLIEEEYI PSAPVLSEDE LQVGDLVVHK RYGIARFTEI
KKVETISGAK EFLVLNFADS TLYVPIERID LIDKYIGDDV NVKLDSLKKG TWSKKVSKAK
RNIETIVRDM LLIHYIRNNT TGVALPGDSE LESEFAKTFP YIETEDQLKA IQDVFEDLVS
GKPMDRLLVG DAGYGKTEVA IRAIFRAIVS GKQAALLAPT TVLARQHYEN IAERFKPFGI
RVALLDRFVT KKEREEILRD VKNGKIDLLI GTHSILNNVV FADLGLVVID EEQKFGVEQK
EKFKKLRVNV HVLSMSATPI PRTLHMALSE LKEFSEIKTP PFGRKEVQVH IGPFDDRIVR
IAILREINRG GQVIYVHNRV NTIYDVYERL KELLPEVSIV IGHGQQSKSE LKRAIDMFFH
GKADVLLCTT IVENGVDVPN ANTLIVDDAH RYGLAQLYQL RGRVGRSDKI SFAYFFHPKH
VNDKVLERLY AIKSYVGPGS GLKIAMRDME IRGIGAVFGL EQHGYINDIG LNYYLELLDE
TIKESKGELI SKVDTELEGI PGSIIIPEAY IYDPFERMRF YRRIASATSI DELMDIKLEL
EDRFGKIPNS VENLLKYGML RVLLWKMGVK KATIGDSTIV VEFKNGFFEK ISERYIYNEK
EDSYIFFCEV EEVLEKFSTV HAK
|
|---|
| |