| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1189 |
|---|
| Symbol | |
|---|
| ID | 5452981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 1278807 |
|---|
| End bp | 1280339 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 640874960 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001410693 |
|---|
| Protein GI | 154249868 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.906384 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA AGGAAAAATT TAGTTTGGTA TTACCTTTAT TTATTGTTTT ATTAATTTGT
ATTTCCATAT TTGCCATCTT AGATTTTTTT ATGCATTTAC TTAATAAGCC AAGAGGTATA
TTAATCTCAA ACTGGAACCA TACTATTCCG TTTTATGAAA GAATTGATAA TCCTGGTAAG
TTAGAACTTG CAGGACATTT TAGAATTGAC GAAAACAACT TAAAAAAAGA TTTGGCTATT
GTTTTTCAGA AAGCAATTGT AAATAGGTTA GAAATATACG TTAATGATAA ATTTATAAAT
GCTTTTGGGG ACGCGAAAAG TGGTAATTTA TGGCCTAGCG CGATTGTTCA AGAATTACCA
AAAGAGGTTT TGAAAGAAGA GAATACATTG AAATTAGTAA TTTATGGAAC TGTTGGATAT
GGCATTTCGT ATAATCCGTA CATAACCGAA GCAAATATAG CAAGAAAAAC AGCGTATTGG
ATTACTTTAT TAAGGAACAA TATAGCTTTA ATTGCAATGG GAAGCGCGAT GATAATTGTG
TATATACTTC TTTTTAGTTA TTCTTTATTA GATTTTGCCG ATAAGAAATT GTATTTAAAC
ATTGGATATT CAATTTTTTT CACAATTCTA TCCCTTATAC AATTCATTTA CAGGGAAACT
TCTGGTAGTC AATTTATGTA TTTAATATTA GAAAAATTGA GTACAATTTC TCCGTTGTTT
GGTATAACAT TTATATATTT TGGATTAAAT TCATTAGTTA AGCGAGAAAT TAAATTATTC
TGGAAGAATG TTTTAATTTT TACTCCTATT TTACTTACTA TTCCAATTTT TTCTTTTAAC
AGAATTTCGA TGTATAATAA TTTAGTAAGC CTTGTAGAGC TTTATTCGTT TTTGATGGTT
TTTTTAACAC TGTTCTTGAT AGTTCGTTAC CAAATGAAGG AATATTATTT TCCAATACTC
TTTCTTACAA CAACCGCACT TCAAACTTTG TATGTTCTGG TTAATCAGCT ACCAGGTGAG
TTAATGATAG TTTATGGTCG AATTGTATTT TCAATTTACA TTGGTACGTT AACTATCAAG
AAATTCAAAA ATATATCGGA AATTAAAAGA ATTTTAGAGC AAGAAAATCT TATTGACAAG
TTAACTGGTG CGTACAATCG TAAGATAATA GAGTATATAA AACCAGAAGG AATTCTTGTT
ATACTTGATT TAGATAACTT TAAAGAGGTT AACGATATTT ATGGTCACAT CCACGGTGAT
AAAATATTAA AACGTTTTGC GGATATTGTA AAGCAAAATA TTAGAAGTGG CGAAGATTAT
TTTATAAGGC TCGGCGGAGA TGAGTTTTGT ATAATAACAA AATCAGTAGA TATTAAAGGT
ATGATGGAAA GGATATACAA TGCTTCAAGA AATGAGCTGG GTTTAGGTTT TTCTTACGGT
TTTGCGGCTT TCACAAATTT TGATGAAGCT TATGCACAGG CGGATAAGGT TATGTATGAA
ATGAAAGAAA GAAGAAGGAG GGGAAAACTA TGA
|
|---|
| Protein sequence | MKIKEKFSLV LPLFIVLLIC ISIFAILDFF MHLLNKPRGI LISNWNHTIP FYERIDNPGK
LELAGHFRID ENNLKKDLAI VFQKAIVNRL EIYVNDKFIN AFGDAKSGNL WPSAIVQELP
KEVLKEENTL KLVIYGTVGY GISYNPYITE ANIARKTAYW ITLLRNNIAL IAMGSAMIIV
YILLFSYSLL DFADKKLYLN IGYSIFFTIL SLIQFIYRET SGSQFMYLIL EKLSTISPLF
GITFIYFGLN SLVKREIKLF WKNVLIFTPI LLTIPIFSFN RISMYNNLVS LVELYSFLMV
FLTLFLIVRY QMKEYYFPIL FLTTTALQTL YVLVNQLPGE LMIVYGRIVF SIYIGTLTIK
KFKNISEIKR ILEQENLIDK LTGAYNRKII EYIKPEGILV ILDLDNFKEV NDIYGHIHGD
KILKRFADIV KQNIRSGEDY FIRLGGDEFC IITKSVDIKG MMERIYNASR NELGLGFSYG
FAAFTNFDEA YAQADKVMYE MKERRRRGKL
|
|---|
| |