| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0966 |
|---|
| Symbol | |
|---|
| ID | 5452043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 1058282 |
|---|
| End bp | 1060234 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640874728 |
|---|
| Product | DNA gyrase, B subunit |
|---|
| Protein accession | YP_001410473 |
|---|
| Protein GI | 154249648 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGATA GAGTAGACAA TCCCACAACA AATGTTAATA ATATCAATGA AGCAAGTGAT
TACAATGCTC AAAATATACA AGTTTTAAAA GGTCTTGAGC CTGTCAGGCA AAGACCGGGT
ATGTATATTG GTTCAACAGG AAAGAATGGC TTACACCACC TTGTATATGA AATTGTTGAT
AATAGTATCG ACGAAGCCCT TCAAGGATTT TGTGATACTA TAAAAGTTAC AATAAAGTCC
GATGGTTCAG TTGAAGTGGA GGACAACGGT AGAGGTATCC CTGTCGATAT CCATCCCGAA
ACAGGCACAA GCGCTCTAGA AGTAGTCATG ACTACGCTTC ACGCTGGTGG AAAATTCTCA
AAAAGCAGTT ACAAAGTTAG TGGTGGTTTA CATGGTGTTG GTGCTTCCGT TGTTAATGCG
CTTTCTGAGT GGATGGAAGT TGAAGTCCAC AGGGATGGGA AAATTTATAG ACAAAGGTAC
GCCAGAGGTG TAAAAACAAC AGAAGTTGAG GTTATTGGAG AAACAAACAA GAGAGGAACA
ATCGTAAGGT TCAAACCAGA TAAACTCATA TTTACAACTA CCGAATTTGA TTCGGATACC
ATATTAACAC GCTTAAGAGA CTTGGCTTTT CTCAATCCAA GCATAACAAT CGAATTTGTT
GATGAAAGAA ACGATATTAA AAGGACACTC CATTACGCTG GCGGTTTGAA GGAATTTATA
GCTCATTTGA ATAAAGGTTC AAAAACATTA CATGAAGTGG TTGTTATCGA TGGTTCTCAA
CAAGATTGCG AAGTGCATAT AGCATTCCAA TACACGGATG AAGATGGTGA AACAATAGTT
TCATTTGTCA ATAATATAAA AACAATCGAT GGTGGAACGC ACGTTACTGG TTTTAAAACG
GCTTTCACAA GAGTTGTTAA TGAACTTGGG AAAAAGAAAA ATTTAATTAA AGGTGAACCG
TTCAAAGGTG AAGATTTACG TGAAGGTATG ACCGCTGTTG TTAACGTACT TATGATGGGA
ACACCTCAAT TTGAAGGACA AACAAAATCA AAACTTGGAA ATGAAGAAAT CCAAGATGCC
GTTGCAAAAG TTGTAAGGGA TAAACTAACC GATTATTTCG AAGTTAACGA AACAGTTTTA
AAGATAATCA TTCAAAAAGC CCAACAAGCA AGAGAAGCAA GAGAAGCTGC AAAAAGAGCA
AGGGAAGCCG TAAAAAGGAA GAGCGCGCTT GGCGCGTCAA CATTGCCGGG TAAACTTGCT
GACTGTATAA CCAAAAATTT CGAGGAGGCA GAACTATTTA TTGTTGAGGG AGATTCCGCA
GGTGGTAGTG CAAAACAAGC TAGAGATAGA AACTTCCAAG CCATTTTACC ACTCAGGGGA
AAAATACTAA ACGTTGAAAA GAGCAGTGAA TTAAAACTTC TCAAAAATGA ACAGGTAAAA
GATATAATAA TGGCTATTGG TGGAGGGATT GGCGAGAATT TTGACACAAG CAAACTTAGA
TACGGAAAAA TTGTTATAAT GACCGATGCT GACGTTGATG GCGCGCACAT ACGAACGCTC
CTCTTAGCCT TATTCTACAG GTACATGAGA CAACTAATAG AAGAAGAGAG AATATACATA
GCAATGCCAC CTTTGTACAA ACTGTCTATA AGCGGAGAAA AACCGATGTA TCTATATTCC
GATGAAGAAT TGAACGAAAT GATAAACATA GCTAAGCAAA ATAACAAAAG ATATGAAGTC
CAGAGGTACA AAGGTCTTGG TGAAATGAAC CCTGAACAAC TTTGGGAAAC CACGATGAAT
CCGAAAACAA GAAAGATAAT AAAAGTAAAG ATAGAAGACG CGGAAGAAGC AGACAGCCTT
TTCGAAATAC TTATGGGTAA AGATCCTGAA GAACGAAGAG AATACATAAT GAGACACGCA
AGACAACTTA GCTTAGTCGA TTTAGATGTC TAA
|
|---|
| Protein sequence | MIDRVDNPTT NVNNINEASD YNAQNIQVLK GLEPVRQRPG MYIGSTGKNG LHHLVYEIVD
NSIDEALQGF CDTIKVTIKS DGSVEVEDNG RGIPVDIHPE TGTSALEVVM TTLHAGGKFS
KSSYKVSGGL HGVGASVVNA LSEWMEVEVH RDGKIYRQRY ARGVKTTEVE VIGETNKRGT
IVRFKPDKLI FTTTEFDSDT ILTRLRDLAF LNPSITIEFV DERNDIKRTL HYAGGLKEFI
AHLNKGSKTL HEVVVIDGSQ QDCEVHIAFQ YTDEDGETIV SFVNNIKTID GGTHVTGFKT
AFTRVVNELG KKKNLIKGEP FKGEDLREGM TAVVNVLMMG TPQFEGQTKS KLGNEEIQDA
VAKVVRDKLT DYFEVNETVL KIIIQKAQQA REAREAAKRA REAVKRKSAL GASTLPGKLA
DCITKNFEEA ELFIVEGDSA GGSAKQARDR NFQAILPLRG KILNVEKSSE LKLLKNEQVK
DIIMAIGGGI GENFDTSKLR YGKIVIMTDA DVDGAHIRTL LLALFYRYMR QLIEEERIYI
AMPPLYKLSI SGEKPMYLYS DEELNEMINI AKQNNKRYEV QRYKGLGEMN PEQLWETTMN
PKTRKIIKVK IEDAEEADSL FEILMGKDPE ERREYIMRHA RQLSLVDLDV
|
|---|
| |