| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCV52592_0425 |
|---|
| Symbol | |
|---|
| ID | 5407577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter curvus 525.92 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009715 |
|---|
| Strand | - |
|---|
| Start bp | 1684705 |
|---|
| End bp | 1686582 |
|---|
| Gene Length | 1878 bp |
|---|
| Protein Length | 625 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640873141 |
|---|
| Product | TonB-dependent receptor domain-containing protein |
|---|
| Protein accession | YP_001408931 |
|---|
| Protein GI | 154173702 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00623502 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAATA TCTTATTTTC AGGCGCGATC GCGGTATCAC TTTTGGGTGC TGACAATATA
GCTTCCAGCG CGGTCATAGC CCCCATAAAA GAGTTCGCTC CACCGCCTTT GATCACTCCA
AATATCGCTC AAAGCGCATT CTTGGAAAAT CAATTCGACA GAGCCGATCG AAGCAGATAC
TACTTCGTTA CGAACAAGCT CGACGAATCT ATGGATAAAT TTCACCTAAG CTCGGGCATA
TATGGCGGCA GCTTTTACAG CTCGGCATTA TATCGTTACA GAGGGGCGAA TTTTTATACG
ATCTTAAACG CTCACTATAC CAAAGCTAAT GACTACAAAG ACGGTGACGG CGATAAAGTC
GGCTTTGGCT ATAAGCGCTA CGGGCAAAAT TTTATCGTAG GCTACTTGCC AAACGATATC
AGCGAGATCA GAGCTACGTT TTTGCACGAC AGGATAGATG ACGACAAGCA GCCACAGCAC
CAAATGGACG CGGTAAAGAC CGAGCGATAC GCGACGAAGC TTGATGCCAG GATCGGCGAC
GAGGCTCTTG GCAATACGCT AAATTTAGAA TTCATGTATA GGCAAGTCGA GCGAGAGGCA
AACAACTACG CCCTTCGCAA CTCCTCGTCA AAGGCTCGCG TCGAGATAAA GCGTAAAATT
TTTGATTTCG GTGCGAAATA CGACACGGAT ATTAGCGACT TTCATAACCT CGTAGGCTTT
AAAATAACCC GCGACAGACA CGAGGGCAGG CGCTATACTC TGACAAACGC GGGCTTTGTG
CATACGGGAA ATAGATTTCC AAAGATCGAT ACTAAAATTT ATCAAATTTA TGACACCATA
AGCTACGATC TAAACGAGCA AAACAGGCTG AGCTTCGGGC TTGATTACGT TTGGAACAAG
AGCGAGACAA AGAGCCTTGA CGAGGTTTTC GTGATGCCGA ACATGCCTGC TGCGATGTCA
AACAACCTAA ACACCACGAG AAAGCTTTGG CGAAGCATTT ACGGCAAGGA CTTTGATGGC
AGTATAAATC ACGACGGGCT AAGCGGAGCG CTAAAGTATG AATTTAAGCC TAATGAAAAA
GATAGCTATT CGCTTGCCTT AGAGAGCCTT TATAGAGTGC CTTCAAACAT GGAGCGCTTC
AACGCGCTAT TTGGAGCGGG CGATAATGGC TGGATATCAA ATCCTTTCCT AAAGCCGGAG
CGTCACAACC GCGTGAAGGC CGACTTTAAA TTTGCGAGCG AGGCCTATAA GAGCTATCTA
AATTCCATGT ATGGCGAGGA TTCGTTCGCT TTAAAGGGAT ACCTCATAGC AGACGATGCA
AACGACCTCG TGATATATGA CCGCAGACAC GGGGCTGCGA GCACACCGAC CGTAAATAGG
AACGCCGTCA CTTCGCGCAA CGTCGATGCT AGGCTGTATC TTGCAAATTT GGGCGCCGAG
CTAAATTTCG CTAGAAATTT CGGAGCTAAA TTTAACGCGT ATTATAGCTA TGGACAAAAC
AAAACCGACG ACAGACCTCT TTATCAGATG AGACCGTTTG AGGCCAATTT GCAGCTTGAT
TACCGCGACT ACGCCAGCTT TGGTAGCTTC AACCTAGGCA CGGCGCTACG ATACGTAGCC
AAGCAAACCA GAGGAGATTT TGATAAGAGC ACTGGCTTTG GCATTGATCT AAAAGAGGCG
GCAAAGTCCT TTACGACGAT GGATATTTAC AGCGGGATCG AGTTTAAAAA TAAGGTCGGC
ATCAGGCTTG GCGTGAATAA TATCTTTGAT AAAAAATACG CCGAGTTTAT CAGCGGTGCG
CATGTAGGCG CGCTCGCTCC GAATTTAGTA AATGCACCGG GAAGGACGTT TTGGTTGAGT
GTGCATGCTA GTTTTTGA
|
|---|
| Protein sequence | MRNILFSGAI AVSLLGADNI ASSAVIAPIK EFAPPPLITP NIAQSAFLEN QFDRADRSRY
YFVTNKLDES MDKFHLSSGI YGGSFYSSAL YRYRGANFYT ILNAHYTKAN DYKDGDGDKV
GFGYKRYGQN FIVGYLPNDI SEIRATFLHD RIDDDKQPQH QMDAVKTERY ATKLDARIGD
EALGNTLNLE FMYRQVEREA NNYALRNSSS KARVEIKRKI FDFGAKYDTD ISDFHNLVGF
KITRDRHEGR RYTLTNAGFV HTGNRFPKID TKIYQIYDTI SYDLNEQNRL SFGLDYVWNK
SETKSLDEVF VMPNMPAAMS NNLNTTRKLW RSIYGKDFDG SINHDGLSGA LKYEFKPNEK
DSYSLALESL YRVPSNMERF NALFGAGDNG WISNPFLKPE RHNRVKADFK FASEAYKSYL
NSMYGEDSFA LKGYLIADDA NDLVIYDRRH GAASTPTVNR NAVTSRNVDA RLYLANLGAE
LNFARNFGAK FNAYYSYGQN KTDDRPLYQM RPFEANLQLD YRDYASFGSF NLGTALRYVA
KQTRGDFDKS TGFGIDLKEA AKSFTTMDIY SGIEFKNKVG IRLGVNNIFD KKYAEFISGA
HVGALAPNLV NAPGRTFWLS VHASF
|
|---|
| |