| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCV52592_0106 |
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| Symbol | |
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| ID | 5406932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter curvus 525.92 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009715 |
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| Strand | - |
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| Start bp | 791198 |
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| End bp | 793042 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640872242 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001408074 |
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| Protein GI | 154173683 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00530506 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGCCG CAAAAGAAGC TTTGAGCCAA ATAGAGGAGC TTTTCACTGA AAATGCAAAA
GGTTTTCTCA CCTATGAAAA ACTCGTAAAA TTATTAGACA AAGCGCCTAC GGCGACGATG
ATAAAAAAGA TAGAGCAGCT TGCTAAAACA CATAAAGTCC AGCTGATGAC AGCTGCCGAG
ATCGCAAAGA TGAGAAATAT CGCCGATGCG AAAAAGCGCC TTGAAAATAC ACAAAAAACA
GATGTGAATA TCGAAGAAGA CCTCGATCTG ACAAGTGACA ACGACTTTTT AGAGTGGTCG
CGCTCGGATA GTCCGGTGAG GATGTATCTA AGAGAAATGG GGCAAATTTC ACTGCTTACA
AAAGACGAAG AGGTCGAGAT CAGTAAAAAG ATCGAGCTTG GCGAAGATAT CATTATAGAC
GCCTTTTGCT CGGTGCCGTT TTTGATAGAT TTCATACTTG ACTACAAAGA GCCGCTCATC
AACAGAGAGC GCCGCGTCAA AGAGCTTTTT AAAAGCTTTG AAGACGAGAG CGAGAGCGAA
GACGAGGACA TCGAGAACGA CGAGGACGAA GAGAACGAAG ACGAGGAAGC GCCCAAAAAA
TCGCTCAAAA ACGATAAACG CGCAGAAAAG GTCATCGAAA GCTTCAAAGC TCTTGAAAAA
GCAAAAAAAG AGTGGCTAAA AACCGTAAAT AAGCAAGAAA AGGTCGAAGT AGAGGACACT
ATGTCAAAGC TCACCCTTGC TTTTAAAAAG AAAATTTTAA AAGACAAGCT GATGGATCTA
GGGCCGACCA GTAAGCTCAT AAGCGAGATC GTAAAGTCCA TGGAGACCGC TCTAAAAAGT
GATGATGAGT TTGACCGCGA GCTAAAGCGC CTGGAGTATC GCTTGCCGAT GTTTAGCGAT
GAGCTCAAGA AAAATCACAA AAGCATACTA AAAGACATCA TCAAACTAAA CAAGGAGGAG
ATCGCAGCTC GCGTGCCTGA GGCGACGATG GTTTCTACTT ATGTCGAGAT CAAAAAGCTC
TTTACAACAA AAGAAGCGAG CAAGCAAGGC TTTGACCTGG AGCCCGCACG CTTAAAGGAA
ATTTTAGAGC AAATCAAGCG CGGCAAGAAA ATATCAGACG AAGCCAAAGC TCGTATGGCA
AAGTCGAATT TGCGCCTTGT AGTATCTATC GCCAAGCGCT ATACGAACCG CGGTTTACCG
TTTTTGGACC TCATACAAGA GGGCAATATC GGTCTCATGA AAGCCGTCGA TAAATTCGAA
TACCGCAAAG GATATAAATT TTCCACCTAT GCCACATGGT GGATACGCCA AGCTATCAGT
CGCGCTATAG CCGATCAAGC TCGCACTATC CGCATACCGA TACACATGAT AGAGACGATA
AACCGTATCA ATAAAATCAA CCGCAAATAT CTGCAAGAAG AGGGCAAAGA GCCTGATGTG
AGCGTTATCG CAAAAGAGGT CGGACTAAGT GTCGATAAAG TAAAGCAAGT CATAAAAATA
ACGAAAGAGC CTATCAGTCT AGAAGCCCCT ATCGCAAACG AAGAGGATGG AAAATTTGGC
GATTTTGTAG AGGATAAAAG CTCGCTTTCA CCGATAGAGC AGATTTTAAA AGGCGATCTA
AGAGAGCAGA TAGATGATGT CTTGTCACAG CTAAATGACC GTGAAAAGGC CGTCATCTGC
ATGAGATTTG GACTGCTTGA AGACGAGAGC GATCGCACTC TTGAAGAGAT AGGCAAAGCT
CTAAACGTGA CTCGCGAGCG TGTCCGGCAG ATAGAAAGCT CCGCTATCAA AAAGCTAAAA
CACCCGAAAG TAGGCAGAAA GCTCAAAAAC TATATCGAGG GGTAA
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| Protein sequence | MSAAKEALSQ IEELFTENAK GFLTYEKLVK LLDKAPTATM IKKIEQLAKT HKVQLMTAAE
IAKMRNIADA KKRLENTQKT DVNIEEDLDL TSDNDFLEWS RSDSPVRMYL REMGQISLLT
KDEEVEISKK IELGEDIIID AFCSVPFLID FILDYKEPLI NRERRVKELF KSFEDESESE
DEDIENDEDE ENEDEEAPKK SLKNDKRAEK VIESFKALEK AKKEWLKTVN KQEKVEVEDT
MSKLTLAFKK KILKDKLMDL GPTSKLISEI VKSMETALKS DDEFDRELKR LEYRLPMFSD
ELKKNHKSIL KDIIKLNKEE IAARVPEATM VSTYVEIKKL FTTKEASKQG FDLEPARLKE
ILEQIKRGKK ISDEAKARMA KSNLRLVVSI AKRYTNRGLP FLDLIQEGNI GLMKAVDKFE
YRKGYKFSTY ATWWIRQAIS RAIADQARTI RIPIHMIETI NRINKINRKY LQEEGKEPDV
SVIAKEVGLS VDKVKQVIKI TKEPISLEAP IANEEDGKFG DFVEDKSSLS PIEQILKGDL
REQIDDVLSQ LNDREKAVIC MRFGLLEDES DRTLEEIGKA LNVTRERVRQ IESSAIKKLK
HPKVGRKLKN YIEG
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