Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mboo_2385 |
Symbol | |
ID | 5412108 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Methanoregula boonei 6A8 |
Kingdom | Archaea |
Replicon accession | NC_009712 |
Strand | - |
Start bp | 2452910 |
End bp | 2454742 |
Gene Length | 1833 bp |
Protein Length | 610 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640869641 |
Product | type II secretion system protein |
Protein accession | YP_001405542 |
Protein GI | 154151924 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1955] Archaeal flagella assembly protein J |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0700595 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGTCC CTGCATTTCT GAAACGGGCC GGGGTGTCGC TCCAGAACGC GGAACTTGTC ATCCTTGGGA CAAACCTGAA CCGCGACCTC CGGTCTGCCC ATCTATCTTA CACTGCTGAA CAGTACCTTC GAACGACCCG GATCAACTCC GCTGCCACCA CCCTGATCTT TTTTGCATTT TTCGGATTTG TCCAGTTCAC CGGCTATGAT TTTGGCCTCT TTGCGCTGAT TCCCCCGCTC ATTTTCTGGA TCTTTCTGTT TGCCCTTTGT GTACCGGGAA TGTACCTCTT TCAGGTCTAT TATCCCGTGA TGATCGCACG CGGTAGGAAA TCGAAAATCG ATCTTGACCT GCCGTATGCA GTCTCGTATA TGCAGGCCCT CTCTACCACG ATGTCGCCAT TCGAGGTCGT AAAGAGGATC TACGAAGAGA AAGCGATGTT TAATGAGGTC TCGCTTGAAT TCGGGCAGGT GGTTCGGGAC GTAGAACTCT TCGGCGACGA CCTGATCACC GCGCTACACA ATCTCCAGAA GACCACTCCC TCACCTCTGT TCCGGGATTT CGTCAACGAT CTCGGGGTGG TTTATGAAAG CGGCGGTGAT ATTACCGCGT ACCTCTCTGC AAAGACCGAA TTCTTTCACG AACAGGCCAA GAGGGAACTT GACCTGCTGC TTAAGACCAT CGAGATCATG GCGGAGGTCT ATGTCTCGGC CTTCGTGGCG GGCCCTATCG CGCTCATTAT TATGATCGTG GCGCAGGGAA TGACCAGCGC TGCGACAATG ACCTGGCTTG TTCCCTTCAT GTATCTCGTC ATCCCGGTAG GGGCTATTAT TATGATCTGG ATGCTTTCGC TCATGCTGCC CCCAGAGAAC CTGGAAGTTA CCAGAAGGGA GATGGCCGAT ACCGGATTGA GTTTCGGGAT TTCGGCCGAT GAGTATCCTT TTCAGGAAGA CCAAGCGTTT CTCCGGTCCC TCGAAGCCAA ACGGCAGGAG CGCCGGATCT ATAACCTGCT CCGGCATCCG TTCCGGACCT ACATCTCCAA CTACAATTAC AGCCTGATCG CGGGAGTCAC ATGTGCCGGG ATATTCGCCC TCACACTTGC ATCCGGTGGC ATGAATGCCC TCTTTCCGAA GAACGCGTAT GAAGGCGGCG TCTGCCTGAT TGCAATTGGC TTTATGGCCC CGGTTTCCCT TGCGTACGAA GGACGGCGTT GGTACGTGAT CAATGTCGAG AATAACATTC CTGAGTTCCT GCGGGAACTT TCCGATATGA TCGATATCGG CCTGACGCTG CCGGATGCGA TCCACCGGAT CTCAAATGCG AAGCTGGGCC TGCTGAGCTC GGAGCTCGCG ATCGTTTCCC GGGATGTCAG TACGGGGGCG TATGTCAACT CAGCACTTGT CCGGATGGAA GAGCGGATTG GTGTTATCTC GGTCAAACGT GCCATATCGC TGCTCGTGAA GGCAAGCGAG GTCACCTCGA ACCTCAGGGA CATTTTCGTT ATCGCCATTA CGGATTTTGA GCACTACCTC AAACTCAGGA GCGAGCGGGC CAACACTGCC ATCGTCTACG TGATGATCAT CTACCTCTCG TTTGGGATCT ACCTCTACAC GGCGTACCAA CTCAACGGGC CCTTTATGTC CAGTTTTTCC TCGTTCAATC TCAATTTTAA TATTGCCCAG AACGTGACGG AGATGTTTGA TATCGCGATC GCCCTCGGCC TCTTCTCCGG CATCATGGCC GGCCAGTTCA GCTCAAACAG CATCCTAGCA GGGTTCAAGC ACAGTATTGT CCTACTCGCG GCAGCAGTGG CCATGTTCGT ATTTATCGTG TGA
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Protein sequence | MAVPAFLKRA GVSLQNAELV ILGTNLNRDL RSAHLSYTAE QYLRTTRINS AATTLIFFAF FGFVQFTGYD FGLFALIPPL IFWIFLFALC VPGMYLFQVY YPVMIARGRK SKIDLDLPYA VSYMQALSTT MSPFEVVKRI YEEKAMFNEV SLEFGQVVRD VELFGDDLIT ALHNLQKTTP SPLFRDFVND LGVVYESGGD ITAYLSAKTE FFHEQAKREL DLLLKTIEIM AEVYVSAFVA GPIALIIMIV AQGMTSAATM TWLVPFMYLV IPVGAIIMIW MLSLMLPPEN LEVTRREMAD TGLSFGISAD EYPFQEDQAF LRSLEAKRQE RRIYNLLRHP FRTYISNYNY SLIAGVTCAG IFALTLASGG MNALFPKNAY EGGVCLIAIG FMAPVSLAYE GRRWYVINVE NNIPEFLREL SDMIDIGLTL PDAIHRISNA KLGLLSSELA IVSRDVSTGA YVNSALVRME ERIGVISVKR AISLLVKASE VTSNLRDIFV IAITDFEHYL KLRSERANTA IVYVMIIYLS FGIYLYTAYQ LNGPFMSSFS SFNLNFNIAQ NVTEMFDIAI ALGLFSGIMA GQFSSNSILA GFKHSIVLLA AAVAMFVFIV
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