| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1865 |
|---|
| Symbol | |
|---|
| ID | 5410334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1939649 |
|---|
| End bp | 1940434 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640869103 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001405023 |
|---|
| Protein GI | 154151405 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | [TIGR01291] ABC-2 type transporter, NodJ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.424245 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCACC TCTGGGCCAT TCCCCGGGTC TCGCGCCGCG CCGGCAGGGT CTGGCGCCGC
AACTTCGATG TCTTTTGTAA GACCTGGAAG GTGAACTTCT TCCCGCCGTT TATCGAGGCC
CTCCTTTACC TCTCGGCCAT CGGCCTTGGG ATCGGGAGTT ACATTGGCGC ACTCAACGGG
GTGCCGTACG TGAATTACAT TGCACCGGCC ATCCTTGCCA TCTCGGCCAT GAACTCGGCC
TTCTTCGAGT GCACCTATGG CTCCTACGTG CGGATGTATT ACCAGAAGAG CTTTGACGCG
ATCATCGCGA CCCCTCTCTC CATCGAGGAC GTAATCGCCG GCGAACTTCT CTGGGGCGCC
ACCCGGGCCG TGATCTCGGT TACGATCATG CTGCCGGTGC TCGTGGCCTT TAACGTGATC
TCCCTGCCCT TCTCGCTTCT TACCATACCA CTGGCATTCA TCGGCGGCCT CATGTTTGCC
GGCCTTGCCA TGTGCTTTAC TGCGATCACC CCGGGCATTG ACACCCTCAA CTACCCGTCG
TTTTTGCTCA TCACCCCGAT GATGCTCTTC TCGGGCACCT TCTTTCCGCT CTCGATCCTC
CCGGCGATCT TCCAGTACGT TGCCCTTGCC TTCTTCCCGC TCACGCACCT GGTCTCACTC
ATGAGGATGG CTACCCTTCC GGCGCCGGGT GCGATCCTTT TGCTCAATAT CACCTGGATC
CTTGTTGCGA CCGTGGTGTT CTGCATCATC TCGATCAACC TGATGCGGCG CCGGCTGATC
GTATAA
|
|---|
| Protein sequence | MAHLWAIPRV SRRAGRVWRR NFDVFCKTWK VNFFPPFIEA LLYLSAIGLG IGSYIGALNG
VPYVNYIAPA ILAISAMNSA FFECTYGSYV RMYYQKSFDA IIATPLSIED VIAGELLWGA
TRAVISVTIM LPVLVAFNVI SLPFSLLTIP LAFIGGLMFA GLAMCFTAIT PGIDTLNYPS
FLLITPMMLF SGTFFPLSIL PAIFQYVALA FFPLTHLVSL MRMATLPAPG AILLLNITWI
LVATVVFCII SINLMRRRLI V
|
|---|
| |