| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1735 |
|---|
| Symbol | |
|---|
| ID | 5411967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1814245 |
|---|
| End bp | 1816047 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640868970 |
|---|
| Product | DNA topoisomerase VI subunit B |
|---|
| Protein accession | YP_001404895 |
|---|
| Protein GI | 154151277 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1389] DNA topoisomerase VI, subunit B |
|---|
| TIGRFAM ID | [TIGR01052] DNA topoisomerase VI, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.105273 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCTCG CTGAGGAGCT TGCAAAGCAG CAGCGCAGCA TCAGCGTAGC GGAATTTTTC
GAGAAGAACA AGCACCTGCT GGGCTTTGAC TCCCCTACCC GGGGCGTGAT CACCACTATT
AAAGAGGCAG TGGATAACGC CCTAGACGCC TGCGAGGAAG CGCAGGTGCT GCCCGATATC
TACATCAGCA TCAAAAAAAC AGGCCCGGAG ATTTTCCGGA TCATTGTGGA GGACAACGGC
CCCGGCATTG TCCCGGCGCA GGTCCCGTTC GTGTTCGGGA AGCTCCTGTA CGGCTCCCGG
TTCCACCAGA TCCGGCAGAC CCGGGGCCAG CAGGGGATTG GGATCTCGGC GGCGGTACTC
TATGCGCAGC TGACAAGCGG CCTGCCAACG GTTGTCATCT CACGCACCGG GGTAAAAGAA
CAGGCGCACA AATTCGGGAT CCAGATAAAA ATTGAGACCA ACGAACCCGA TGTGATCTCC
GAGCAGCCTT TTGAATGGGA CCGGATCCAC GGCACCCGGG TCCAGATCGA GTTCAAGAGT
ACGATGTCGG CCAAGAAGAA GCTGCTCGAA TACCTCAGGT ACACTTCGAT CGTTAACCCC
CATGCCCGGT TCCGGGTGGA GCTGGACGAT GAGGCGTTCA CGTTCGAGCG GGTGAGCCAG
GAGGTGATCG CGTGCCCGGT GGCGATCCAG CCCCACCCGC ACGGGATCGA GTTCGGGCAG
CTCAAACGGA TGGCCGCCGC AAGTGACGAG AAACTGATCG ACTTTCTCGT AAACGGCTTT
TCCCGGGTGG GTAAGAAGAC CGCGCAGGAG ATGTGCGACC GCGCCGGCCT CAAAGTTACC
GCAAAAGTGG CCGGCCTCTC TGCTGACGAA CTCAAAAACC TGCTTGCCGC CATGCAGGCG
GTGGCCGTGC CTGCCCCTCC AACCAGCCAG TGCCTGTCAC CCATTGGTGA AGACTTAATC
CGGCGCGGGC TTGACAAGGA ATTCCAGATG GACTTTGTCG CGGCACGGAC GCGGCCCAGT
TCGGTCTACT CCGGCCACCC GTTTGTGGTC GAGGCAGCGA TCGGATACGG CGGCCGGCTC
GAAGCCGAAG GCAATGCAAC GATCCTGCGC TTTGCAAACC GGGTCCCGCT CATGTACCAG
CAGGGTGCCT GCGCAATCAC TGAATGCATT GCAAACGTCA ACTGGAAATC GTACAACATC
TCCCAGCAGG GCCTCCCCCT TGGGCCGGTG TTGATCCTCG TCCATGTCGC GTCCACGAAC
GTGCCCTTCA CAAGCGAGAG TAAGGACGCA ATTGCAGACA TCCCGGAGAT CGAAAAGGAG
ATCGTGCTCG CGCTCCAGGA TCTTGGCCGT GAGCTTAAGA CATTCCTCTC GCGCAGGGAC
CGTAACAAGC TTGCCGAGGA CCGGGCCCGG GCCGTCTGTG CAGTTATCCC CGAGATCGCG
GCAAAAGTGA GCGAGATCGT GGAAAAGCCG GTGGTCGACA CGACCCCGAT CGAGGGCCGG
CTGATGCGCA AGCTGATTGC AAAGAAATGG ACCCGGGACG GGAAGGTTAC GATCGAAGCG
AACAACTATA CCGCAAGCGA TGTCGAGATC TCGGTCTACG ATATTTCCGC GGATAATGCT
GCCGATGCCG ATATGCCGCC CGCATTCTCG ACCGAGATGG ACGGACAGTT CACGAAAGTC
TGGAAGATGG CAATCCCCAA ACAGACCGTG TGGCGCGTTA CGTACACCGG CAAAGGCGGC
GGCATGCTTG ACATCCGCGG GATAGAGGAC AACAAGAAGA TGGTGGTGGA TCTCGATGTC
TAA
|
|---|
| Protein sequence | MVLAEELAKQ QRSISVAEFF EKNKHLLGFD SPTRGVITTI KEAVDNALDA CEEAQVLPDI
YISIKKTGPE IFRIIVEDNG PGIVPAQVPF VFGKLLYGSR FHQIRQTRGQ QGIGISAAVL
YAQLTSGLPT VVISRTGVKE QAHKFGIQIK IETNEPDVIS EQPFEWDRIH GTRVQIEFKS
TMSAKKKLLE YLRYTSIVNP HARFRVELDD EAFTFERVSQ EVIACPVAIQ PHPHGIEFGQ
LKRMAAASDE KLIDFLVNGF SRVGKKTAQE MCDRAGLKVT AKVAGLSADE LKNLLAAMQA
VAVPAPPTSQ CLSPIGEDLI RRGLDKEFQM DFVAARTRPS SVYSGHPFVV EAAIGYGGRL
EAEGNATILR FANRVPLMYQ QGACAITECI ANVNWKSYNI SQQGLPLGPV LILVHVASTN
VPFTSESKDA IADIPEIEKE IVLALQDLGR ELKTFLSRRD RNKLAEDRAR AVCAVIPEIA
AKVSEIVEKP VVDTTPIEGR LMRKLIAKKW TRDGKVTIEA NNYTASDVEI SVYDISADNA
ADADMPPAFS TEMDGQFTKV WKMAIPKQTV WRVTYTGKGG GMLDIRGIED NKKMVVDLDV
|
|---|
| |