Gene Mboo_1496 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMboo_1496 
Symbol 
ID5410416 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Methanoregula boonei 6A8 
KingdomArchaea 
Replicon accessionNC_009712 
Strand
Start bp1551522 
End bp1555283 
Gene Length3762 bp 
Protein Length1253 aa 
Translation table11 
GC content51% 
IMG OID640868731 
Productsignal transduction histidine kinase 
Protein accessionYP_001404657 
Protein GI154151039 
COG category[T] Signal transduction mechanisms 
COG ID[COG2172] Anti-sigma regulatory factor (Ser/Thr protein kinase)
[COG3920] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.172842 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACCT TGATCAGCCA CAGGGAAGTG CGGAATGAAC AGGACGTGGT CTCTGCCCGG 
TTCCAGGCAC GCATTATCGC AGAACAACTC GGGTTTTCCA AGAGCGATCA GACCCGAATC
AGCACAGCTG TGTCCGAGAT TTCAAGAAAC ATGTTTCAGT ATGCCAACGG GGGTGAAATT
GAGTTCTGCA TCGATAATGG CAAGGTCCCC ACGGTCTTTT CTATCACGGC CCGGGATCAT
GGCAGGGGTA TTTCCCGGCT TGAGGAGATC CTCAATGGCC GGTTTACCCC GGGACAAGGG
AAAAGGCTGG GCATCATTGT TTCAAAACGT TTAATGGACC AGTTTTTCAT CGACACTCGT
AACGATGGTA CCACGGTTTT TCTGGGTAAG AATCTTCCAC TTACCGCCCC TCCGGTCACT
CCGGATCTCA TCTTGTGGAT CACTGACATG CTGGCAAAGA ATCTCACCCT CAACGGATTC
GATGAGATCC AGATCCGGAA TCAGGATATT ACTGATATTC TGGAAGAACT GCACCTGCGG
CAGGAAGATC TGGCCCAGGT CAACAGGGAG CTCGAAGAAA CCAACCGGGG CGTCGTAGCA
TTGTACGTGG AACTGGATGA CAAGGCCGCT GCATTAAAAA CATTACGTGA CGAGCTTGAG
ATCCGCGTAC AAGAACGGAC GAATGATCTT AGTAAGGCCA ATGATAACTT GGTAACTACC
CAGAAAGAAC TGCACGCACA GTTTGAAGAA CTTGCAGACC GGGACAGGGA GTTGTCGGTG
AGCGAGGAGC GGTTCCGTAT CAGTGCCCAG AGCATCAGCG ACGTGATCTG GGACCGGTCC
ATTCCCGATG GCAGGATGGA ATGGTATGGT CGGATCGATG AGCTGCTCGG GTATGCCCCT
CTTGAGTTTC CCCGGACTTT CGATTCGTGG AAGAAGAGTA TCTATCCTGA TGACCGGGAC
AGGGTCATGG CACTCTTAGA TCGCCATGTA AAGACCCGGG CTCCTTATGC AACGGAGTAC
CGGGTTGTAC AAAAAGACGG GAAGATCCGG TATTGGACTG ACCGGGGAAT TGCCATGCTG
GACAGTCAGG GCAATGCGTA CAGGATGGTG GGTTCCTGCA CTGATATCAC GGATCGCAGG
CTTGCAGACG AGGAGCGGGC CCGTCTCGCC GCCATTGTGG AGTACTCTGA AGATGCAATC
ATTAGCAAAA CACTTGACGG GATCGTCACA TCTTGGAACG CCGGAGCCGA GCGGATCTAC
GGGTATTCTG TACAGGAGAT GGTTGGCAAG GAAATTTCGC TGCTGGAGTC GCCGGATCAC
CCAAACGACA CCGTATTGAT TCTTGAACGG ATCAGGAACG GTGAACCGGT CATCCGCTAC
GAAACCCGGC GCAGGAGGAA AGACGGCGAG CTGATCGATA TCACCCTTAC TGCATCTCAG
ATCAGGGATG CACAAAATCG TCTGATCGGT GTGTCCACCA TTGCCCATGA TATCACCCAG
CGCAAACGGG CAGAAGATGC AATGCATGCT TCCGAGATGC GGTACCGGCG GCTTTTTGAA
GCGGCGCAGG ATGGCATCCT CATCCTTGAT GCAGAGTCCG GCCAGATCGT CGAGGTAAAT
CCCTTTTTAA TCAACATGCT GGGTTTCTCG CGCGAACAGT TCTTGGGTAA GAAAATCTGG
GAGATCGGGA CGTTCAAGGA TATCGTTGCC AACAAAGACA ATTTCGGAGA ACTGCAGCGG
AAAGAATATA TCCGGTATGA GGATATGCCC CTTGAAACCT CCGATGGGCA AAGGATCGCC
GTGGAGTTTG TCAGTAACGT CTACGAGGTG AACAACAAGA AGGTCATCCA GTGCAATATC
AGGGATAATA CCGACCGCAA GCTCGCAGAA GAAGCAAAAA TTGCTTCCGA GATGCGGTAC
CGGCGGCTTT TTGAGGCGGC GCAGGATGGC ATCCTCATCC TCGATGCAGA GTCCGGCCAG
ATCGTTGAGG TAAATCCCTT TTTAATCAAC ATGCTAGGTT TCTCGCGCGA ACAGTTCCTG
GGTAAGAAAA TCTGGGAGAT CGGGACGTTC AAGGATATCG TTGCAAACAA AGACAATTTC
GGAGAACTGC AGCGGAAAGA ATATATCCGG TATGAGGATA TGCCCCTTGA AACTGCCGAC
GGGCGGCATA TAGCAGTGGA GTTTATCAGT AACGTCTATG AGGTGAACAA CAAGAAGGTC
ATCCAGTGCA ATATCCGGGA TAGTACCGAC CGCAAGCTCG CAGAAGAAGC AAAAATTGCT
TCCGAGGTCC GGTACCGACG TCTTTTTGAG ACTGCACAGG ATGGCATTCT CATCCTCGAT
GCAGAGTCCG GCCAGATCGT TGAGGTAAAT CCCTTTTTAA TCAACATGCT GGGTTTCTCG
CGCGAACAGT TCCTGGGTAA GAAAATCTGG GAGATCGGGA CGTTCAAGGA TATCGTTGCC
AACAAAGACA ATTTCGAAGA ACTGCAGCGG AAAGAATATA TCAGTTACGA AGACATGCCC
CTCGAAACTG CCGATGGGCA AAGAATTGCC GTGGAGTTCA TCAGTAACGT CTACGAGGTG
AACAACAAGA AGGTCATCCA GTGCAATATC CGGGATATTA CCAAGCGCAA GCTCGCAGAA
GAGGCACTGC GCCAAAAAAA TGAGGAAATT GACGGGTACT TTACCAATAC CCTCGATCTG
CTCTGCATCG CAGACGCGGA CGGGCATTTC CGACGCCCGA ATAAGGAGTG GGAAACGGCT
CTCGGGTACA GTCCTGCCGA GCTGGAGGGG AAACGGCTCT TTGATTTTGT CCACCCTGAC
GATATGGAGG TGTTTCTTGG TGCAATGTCC GAACTGAGTG CAGGTAAAAA AGTCCTCCAA
TTCACGAACC GGTATCGCCA CAGGAACCAG ACGTACCGCT GGATAGAATG GCGGTTGTTC
TCTGCAGGAA ACCTCATCTA TGCATCGGCA CGAGATGTTA CGGAAAGGAA GAAGATGACC
GATCTGGTCG AAGCGTCGCT AGCCGAGAAA GAGACCCTGC TTCGGGAGAT CCACCACCGG
GTCAAGAACA ACCTCCAGAT CATTTCGAGC CTCCTTAACC TGCAGATCCG TAAGATAGAC
GATCCCAAAA CCATTGAAGT CTTAAAAGAC TGCCAGTCCC GGGTGCTCTC TATGGCACTT
GTCCACGAAC ACCTCTACAA GGGCAAAGAT TTCTCGCGTA TCGACCTGAA AAATTATATC
CATTCACTGG GAATGCAGCT CTCGCAGTCG TACGGAAACG CAAACGAAAT TGTCCGGTTC
GACCTGAATC TCCCTGATAT TTACGTAGAT ATCAATACCG CAATTCCCCT GGGCCTCATC
ATAAACGAAC TGATCACGAA CAGTTTAAAG TATGCATTTA AAGGCAGGAA AGACGGGAAA
CTCTCTATCA CGGCTACTGA GAATGATCGC GCCCTTACGC TTATTGTTGC AGATAATGGT
GTCGGAATGC CTGAAGGCAT CACGCTGGAG AACCAGACGT CACTGGGACT CCGGCTTGTC
AAAACACTCA CCGGCCAGAT CCACGGTACG GTTGTGATCG ATCGGACCGG GGGTACAAAG
TTTGTGTTTG TAATTCCCAA ACCCGCAGAA ATCCAAAGAA CTGGACCGCC GGTAAACACG
CTCACCCGCC AGATCCACAG CACCGAGACA ATTGACCATC CGGATGAGGC GAAGTTTGTC
CTCACGGTCC CCAAACCGGC AGAAACCACG GGCAGGATGT GA
 
Protein sequence
MSTLISHREV RNEQDVVSAR FQARIIAEQL GFSKSDQTRI STAVSEISRN MFQYANGGEI 
EFCIDNGKVP TVFSITARDH GRGISRLEEI LNGRFTPGQG KRLGIIVSKR LMDQFFIDTR
NDGTTVFLGK NLPLTAPPVT PDLILWITDM LAKNLTLNGF DEIQIRNQDI TDILEELHLR
QEDLAQVNRE LEETNRGVVA LYVELDDKAA ALKTLRDELE IRVQERTNDL SKANDNLVTT
QKELHAQFEE LADRDRELSV SEERFRISAQ SISDVIWDRS IPDGRMEWYG RIDELLGYAP
LEFPRTFDSW KKSIYPDDRD RVMALLDRHV KTRAPYATEY RVVQKDGKIR YWTDRGIAML
DSQGNAYRMV GSCTDITDRR LADEERARLA AIVEYSEDAI ISKTLDGIVT SWNAGAERIY
GYSVQEMVGK EISLLESPDH PNDTVLILER IRNGEPVIRY ETRRRRKDGE LIDITLTASQ
IRDAQNRLIG VSTIAHDITQ RKRAEDAMHA SEMRYRRLFE AAQDGILILD AESGQIVEVN
PFLINMLGFS REQFLGKKIW EIGTFKDIVA NKDNFGELQR KEYIRYEDMP LETSDGQRIA
VEFVSNVYEV NNKKVIQCNI RDNTDRKLAE EAKIASEMRY RRLFEAAQDG ILILDAESGQ
IVEVNPFLIN MLGFSREQFL GKKIWEIGTF KDIVANKDNF GELQRKEYIR YEDMPLETAD
GRHIAVEFIS NVYEVNNKKV IQCNIRDSTD RKLAEEAKIA SEVRYRRLFE TAQDGILILD
AESGQIVEVN PFLINMLGFS REQFLGKKIW EIGTFKDIVA NKDNFEELQR KEYISYEDMP
LETADGQRIA VEFISNVYEV NNKKVIQCNI RDITKRKLAE EALRQKNEEI DGYFTNTLDL
LCIADADGHF RRPNKEWETA LGYSPAELEG KRLFDFVHPD DMEVFLGAMS ELSAGKKVLQ
FTNRYRHRNQ TYRWIEWRLF SAGNLIYASA RDVTERKKMT DLVEASLAEK ETLLREIHHR
VKNNLQIISS LLNLQIRKID DPKTIEVLKD CQSRVLSMAL VHEHLYKGKD FSRIDLKNYI
HSLGMQLSQS YGNANEIVRF DLNLPDIYVD INTAIPLGLI INELITNSLK YAFKGRKDGK
LSITATENDR ALTLIVADNG VGMPEGITLE NQTSLGLRLV KTLTGQIHGT VVIDRTGGTK
FVFVIPKPAE IQRTGPPVNT LTRQIHSTET IDHPDEAKFV LTVPKPAETT GRM