| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1061 |
|---|
| Symbol | |
|---|
| ID | 5410897 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1047960 |
|---|
| End bp | 1049270 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640868287 |
|---|
| Product | S-layer-like domain-containing protein |
|---|
| Protein accession | YP_001404222 |
|---|
| Protein GI | 154150604 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1361] S-layer domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.196734 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACCTA CACTCATGAG AAGACATAAA GGACGGATTA TCATACTCCT CCTTGTTCTT
GCGGCATTTC TTGTCTCGCC GGCGTTTGCG GGGACGAGAT ATTTCGAAGG AAGCCCGAAT
CTGACGGCAT ATGTTAGTGG CGCAAACCAG TTTGCACCAG GAAGTTCCAT CCAGATCCCG
GTGGTGATCA AGAACACGGG AATAAATACG TATTACGAGG TGGCATCAAA TATTGTCGAC
CGTGCGGATG TCCCCACAAC GGCGAAGTTT GTGACAGTTG CGATGGGTGC GGGAAATGCA
CCTGTAGTTA TCAAGACTGA CCCGCAGATG ATCGGTGACA TCGCAAGCCA GGACCAGCAG
ACCGCTACCT TTTCAGCTAC CGTCAATGCG GATGCAGCGG GTGGCACCTA TACCCTCCCG
CTCAACATCA CTTACCAGCA GTTTTCTCAT GTCGACCAGT ACGGGATGGA CACATTCCAG
TATTATTATG TCCCAATGAA CGTGACACTC ACCGTACCGC TGGTCATTAA ATCAGAGGTG
ATTCCTGAGG TGATTTCAGC GACCTCTGAC AACCTCGTCG CAGGAGCGGA CGGTTACGTG
AACCTGACGA TTAAAAACAT CGGGTCGTTT GACGGGACCA AGGCAACCGT CCAGATTGTC
CAGAACGATG ATAGTCCCGT CAGTCCGGTG GACAGCAACG TGTATATCGG GGATTTCCCG
GCCGGCAGCA CCGTTTCCTG CCAGTACAAG GTGGCAGTGG CAGACACGGC TCAGAACAAG
ACCTATCCCG TCGACGTTGT TGTGAACTAC CAGAACGACG AGGGTGATAT GGTACCCTCC
CAGTCCCAGA CCGTGGGCAT TGATGTAGGC AACAAGGTAA ATTTTGCCAT CCAGATCTCT
CCCATCGAGA TGAGCCCGGG AAGCAAACAC ACCATCCAGA TCGAATATCA GAATACCGGT
GATACCATGG TTTACAGCGC ACAGGCACGC ATCAGTGTAG CCGCACCCTT TACCAGTTCC
TCTGATGTCG CCTACCTGGG AGATCTCGCA CCGGGACAGA CCGCGGTTGC CACCTACCAG
ATCAGTGTTG CAAGCGATGC TACCCTCAAG GAGTACGGCC TTGATTCTGA GATCCGGTAC
AACAATGCCA TCGGCGATAC CTACGTCTCC GACCCCATGA AAGTCACCAT TGATGTACAG
AACCTCACCG GTCTTGAGGG CATCATCTCC AACCCGGTAT ATCTCTCCCT TATCGCTGCC
GTGATTATCG GCATCATTTA TGCTATCATC CATACCCGGA AGAAACACTA A
|
|---|
| Protein sequence | MIPTLMRRHK GRIIILLLVL AAFLVSPAFA GTRYFEGSPN LTAYVSGANQ FAPGSSIQIP
VVIKNTGINT YYEVASNIVD RADVPTTAKF VTVAMGAGNA PVVIKTDPQM IGDIASQDQQ
TATFSATVNA DAAGGTYTLP LNITYQQFSH VDQYGMDTFQ YYYVPMNVTL TVPLVIKSEV
IPEVISATSD NLVAGADGYV NLTIKNIGSF DGTKATVQIV QNDDSPVSPV DSNVYIGDFP
AGSTVSCQYK VAVADTAQNK TYPVDVVVNY QNDEGDMVPS QSQTVGIDVG NKVNFAIQIS
PIEMSPGSKH TIQIEYQNTG DTMVYSAQAR ISVAAPFTSS SDVAYLGDLA PGQTAVATYQ
ISVASDATLK EYGLDSEIRY NNAIGDTYVS DPMKVTIDVQ NLTGLEGIIS NPVYLSLIAA
VIIGIIYAII HTRKKH
|
|---|
| |