| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0906 |
|---|
| Symbol | |
|---|
| ID | 5410402 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 886604 |
|---|
| End bp | 887875 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640868132 |
|---|
| Product | pseudouridylate synthase |
|---|
| Protein accession | YP_001404067 |
|---|
| Protein GI | 154150449 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0585] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0000103937 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGAAA GTCCGTATCC GCTCGAACGC GAGCTCGGGA TGCAGTTTTA TGCGACCGAC
ACCCCCGGTA CCGGCGGGAC GCTGCGCACC GTGCCGGACG ATTTTATCGT AGATGAAATA
CCCCTTGAGA AAAAAGGCAG CCCCTCCGGC CCGTACCTGA TCTGCCGGCT CACAAAGACC
AGCTGGGAAC TCCAGCATGC GGTAAAGGAG ATAGCAAAAA GGCTCAATAT CAGCCACCGG
CGGATAGGCT GGGCCGGGAC CAAGGACAGA AACGCCCGGA CCACGCAACT GATCTCGATC
TACAAAGTGA CCCCGGAACA GGTTGCTGCA TTGCACCTCA GGGATATCAC CCTTGAAGTG
CTCGGGCAGG CAAACGAGCA GCTCTCGCTG GGTGATCTCA CCGGAAACCG GTTTGATATC
TGGATCCGGG ATGCAGACCC GGAAGATTTG GATAACCGGG TTGTATCTGT TACCGAAGCT
GCGGCCATTG CCCTGCCCAA CTACTTCGGG CTCCAGCGCT TTGGCGTGAT CCGTCCCCTT
ACCCACCGGA TCGGCGAATA TATCCTCCGC GGCGAATACG AGCAGGCAGT GGCAACCTAT
GTGGGCCAGG CATTCCCTCT CGAAAACGAG GTGGCACGCA GGGCCCGGAC CGTTTATTGG
GACACAAGGG ACCCGGCAGC TGCCCTCAGT GACCTTCCTG TTGCGATGTC CTTTGAGCGA
TCCATGCTAT CGTATCTCCA GGCCCATCCC GGCGATTATC CCGGGGCACT CCGGCAGCTC
CCCCCAAAGC TCCTCTCCAT GTTTGTCTCC GCGTTCCAGT CGTACCTCTT TAACTATGCC
CTCTCGCACC GCCTTGCTGC CGGCCATAGC CTTACCGGGG CCGTACCCGG CGACCGGCTC
ATCTTTGCCA ACGGTCGGAC CGATACCGCA ACTGCCGCCA GCAGTGCAGC GATCTCCCTT
CACCTTGCCC GGGGGCGCTG CTCGATTGCT CTCTTTATGC CGGGCAGAGA CGCGGCGGGA
GCTCCTGCTG GTGACGAGGC TACGCAGGCA ATGCTTGCCG ACCTCGGGAT AAATCAGGAT
CATTTCCGCC GGGCCTCGGA GTTCGTGCAG ACCAAATTTG ACGGGGCATG GCGCCCGATA
GCGCTCCGTA CTCCCGTCGA GACCGTCGTG AAGGACAGGG ATCTCCGGCT CCGGTTTACC
CTACCCCCGG GCCATTACGC CACAACCGTC TGCCGGGAAT ACATGAAAGC AGACCCTGTC
CGTATGATCT GA
|
|---|
| Protein sequence | MRESPYPLER ELGMQFYATD TPGTGGTLRT VPDDFIVDEI PLEKKGSPSG PYLICRLTKT
SWELQHAVKE IAKRLNISHR RIGWAGTKDR NARTTQLISI YKVTPEQVAA LHLRDITLEV
LGQANEQLSL GDLTGNRFDI WIRDADPEDL DNRVVSVTEA AAIALPNYFG LQRFGVIRPL
THRIGEYILR GEYEQAVATY VGQAFPLENE VARRARTVYW DTRDPAAALS DLPVAMSFER
SMLSYLQAHP GDYPGALRQL PPKLLSMFVS AFQSYLFNYA LSHRLAAGHS LTGAVPGDRL
IFANGRTDTA TAASSAAISL HLARGRCSIA LFMPGRDAAG APAGDEATQA MLADLGINQD
HFRRASEFVQ TKFDGAWRPI ALRTPVETVV KDRDLRLRFT LPPGHYATTV CREYMKADPV
RMI
|
|---|
| |