| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0817 |
|---|
| Symbol | |
|---|
| ID | 5411496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 789884 |
|---|
| End bp | 791377 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640868042 |
|---|
| Product | ribonuclease II |
|---|
| Protein accession | YP_001403978 |
|---|
| Protein GI | 154150360 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC ACCGGCCGCA TCTCCATGAT ATCGATCTCA GGTCCATTGC ATTGCATGCC
ATGGAAAAAT ACGGTTTCGC GGCCCGGTTT CCCCCTCAGG TAACCGATGA AGTAAACGGG
ATGCAGGAGC GGACTTTTGT TGATTTTCCC GGGGATGCGT GTGACCTGCG TGCGCTCCTG
TGGTCGTCCA TAGACAACCA TGATTCCCAG GACCTCGACC AGCTGGAGTA CTGCGAGCGA
AAGCCGGATG GTACGATCCG GGTCATGATC GCCATAGCCG ATGTCGATTC GTACGTGAAA
GCACACTCTC CCACGGACGA GTACGCGGCT CACAACGGGA CCTCTGTGTA TACCGGTATC
GTTACCTATC CCATGCTGCC AGAACGGCTG TCCTATAACC TCACTTCCCT GTTGCAGGAC
AAGGATCGCC TGGCCGTGAT CATCGAATTT ACCGTACACC CGGAGGGGAG TTTTACTCCG
GGAGAGGTGC ACCGGGCTCT GGTGCGCAAC AAGGCAAAAC TGGTGTACGA GAGTACGGGA
GCCTGGCTCG AAGGAACCGG CCCGATCCCT CCCGGGATAA AGGAGATCCC CGGGCTTGAA
GAGCAGGTTC GTATTCAGGA TGAAACTGCA AAACTCCTGC GGAAATTCCG CCGGGACCAG
GGTGCACTTG AGTTCGATAC CCTGGAAGCC GAGGTAGTCT TAGAGGATGG CGAGGTCAGT
GGGCTTACTA CACGGACGCC CAATCCCGCC CGGGCCCTGA TCGAAGAGTT CATGGTTGCG
GCAAACGGGA CCATGGTTGC ACGGCTGGGA GCTGCCGGTG TCCCGATGAT CCAGAGGGTG
GTAAAGACCC CGAAAAACTG GCCGGGTATC ATCCTTGCCG CCGCAGTCCT TGGTGAGACA
CTGCCCGAGA AACCGGATGC AAAAGCGCTT GCACGATTCC TTGCACGGCA AAAAACTGCC
GATCCGCTTC ATTTTCCGGA TCTCTCCCTT GCCGTCATCA AACTGCTGGG GCCGGGCGAA
TATACGCTGC TCGAGCCGGG CGAGAGTCCG ACCGGCCATT TTGCGCTCGC AGTTATCGAT
TATACCCATG CAACCGCTCC GAACAGGCGG TACGTGGATA TCATTAACCA GCGCCAGATA
AAGGCAATCC TTGCAAAGAG TCCCGGCCCC TATGCTGCTG CTGACCTTCG GGAGCGGGCC
GGCTGGCTGA CTGATCGGGA AAAGGCTTCA AAGAAGGTAA AAAGATTCAT GCGAAAATCT
GTTGCTGCCA TGCTGCTTGC TGACAGTATC GGAAAAACAT TTGAAGCGCT TGTGACCGGC
GCCGCGGACA AGGGAACATA CGTAAGGCTC CTTACTCCTC CTGCAGAAGG CAGGGTGGTA
AAAGGTGAGC GCAATCTCCA GGTCGGGCAG AAGGTCAGGG TAAGACTCCT AAAAACCGAC
CCTTATAACG GTTTTATCGA TTTCGAGTGT ATCAGCCGGG AAAAAATGGT CTGA
|
|---|
| Protein sequence | MKKHRPHLHD IDLRSIALHA MEKYGFAARF PPQVTDEVNG MQERTFVDFP GDACDLRALL
WSSIDNHDSQ DLDQLEYCER KPDGTIRVMI AIADVDSYVK AHSPTDEYAA HNGTSVYTGI
VTYPMLPERL SYNLTSLLQD KDRLAVIIEF TVHPEGSFTP GEVHRALVRN KAKLVYESTG
AWLEGTGPIP PGIKEIPGLE EQVRIQDETA KLLRKFRRDQ GALEFDTLEA EVVLEDGEVS
GLTTRTPNPA RALIEEFMVA ANGTMVARLG AAGVPMIQRV VKTPKNWPGI ILAAAVLGET
LPEKPDAKAL ARFLARQKTA DPLHFPDLSL AVIKLLGPGE YTLLEPGESP TGHFALAVID
YTHATAPNRR YVDIINQRQI KAILAKSPGP YAAADLRERA GWLTDREKAS KKVKRFMRKS
VAAMLLADSI GKTFEALVTG AADKGTYVRL LTPPAEGRVV KGERNLQVGQ KVRVRLLKTD
PYNGFIDFEC ISREKMV
|
|---|
| |