| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0711 |
|---|
| Symbol | |
|---|
| ID | 5411613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 675274 |
|---|
| End bp | 676206 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640867931 |
|---|
| Product | CRISPR-associated Cas1 family protein |
|---|
| Protein accession | YP_001403872 |
|---|
| Protein GI | 154150254 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.067675 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGAG CGATTCCCTG GGTGGCAGTG TATGGGTTTG GCGCTCATAT CAAGTCCACA
CAAAAAAAAC TTAGTATCCT TGCCAAAGGA AAGGTCGAGG AGTACCCGCT TGAAGAGATA
CAAAATCTCC TCATTGTTGG TGGGCATCAC CTTAATTCTA CCACTTTCTC TCACCTGCTC
AGAAATGGAT CGTACATCTC CTTTTTTGAG CCGGATGGCT CCCCCTTGGG AATCCTAAAA
CCCTGGGGGA GTACCTGCGA TACCACCATC CGGGCCCTTC AGGAAGGGGC CCCCAGGGAT
CGTTATGCTA CAGCACTCGC CCAAGCCGCT CTTAAGTCCC GTTTGATTGC AATTGAACAC
ATTCAGGATC AGCAGGGGTC ATCCCTTTTC TATGAGGGAG AGCTGCAAAT ACTTCACAAT
GCACTTCATA ATCTCGAATA TATGGTCAAA CTGGACGAGA TCCGGCGTCT TTCCGATCTG
ACTGCAAATA TGTATTACGA GATTCTTTCG CGTGATATTC CCCGTGAGTT CGATTTCCGG
AGACGCACAG TCAGGCCGCA GTGCGATCCC ATCAACGCTA TGCTCTCTTT TGGCTATGCC
ATGCTTTTTG GGAACTGTTG TGTCCCCGTT ATCGGAGCCC GCCTCGATCC TGATCTCGGG
ATCCTTTATG AGGGATCGGG AGCTCTTGTT CAGGATCTTA TGGCCTCATT TAAAGCCCAG
ATGATTGACG GGGTTATATG GAGCATTGCC CGGGATTCAT TGAATGTCGG GGATTTTGAG
ATAACATCAA ACCGGTGTAT ACTTTCGGAC AACCTGATTC AGAATTTAAT GTCTTCGTTT
CGGAAATCCA TTGATAATCA AAAACTGGAT TGCCAGGTAC ATAATTTCCT GCAGGCTCTT
TCGAACAAGG AAGATCTCAC AATACTGTAC TGA
|
|---|
| Protein sequence | MTRAIPWVAV YGFGAHIKST QKKLSILAKG KVEEYPLEEI QNLLIVGGHH LNSTTFSHLL
RNGSYISFFE PDGSPLGILK PWGSTCDTTI RALQEGAPRD RYATALAQAA LKSRLIAIEH
IQDQQGSSLF YEGELQILHN ALHNLEYMVK LDEIRRLSDL TANMYYEILS RDIPREFDFR
RRTVRPQCDP INAMLSFGYA MLFGNCCVPV IGARLDPDLG ILYEGSGALV QDLMASFKAQ
MIDGVIWSIA RDSLNVGDFE ITSNRCILSD NLIQNLMSSF RKSIDNQKLD CQVHNFLQAL
SNKEDLTILY
|
|---|
| |