| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0638 |
|---|
| Symbol | |
|---|
| ID | 5411460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | - |
|---|
| Start bp | 601177 |
|---|
| End bp | 602736 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640867857 |
|---|
| Product | PKD domain-containing protein |
|---|
| Protein accession | YP_001403799 |
|---|
| Protein GI | 154150181 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3291] FOG: PKD repeat
[COG3889] Predicted solute binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATACCC GTTTCATTTT CCTCACGGGA TTTGTGGTAT TGGTTTGTCT TGCCTGCGTT
GTTATACCAG TCGGTGCGGA TAACAACACT ACCGCTACTA CTACAACTAC AGCCGTCACT
ACCACGGCTA CGGCTACTCC AACTACGACT GCCACGACTA TAGTAACTAC CACGGCTACG
GCTACTCCGA CTACAACCGC CACTACTGCA GTAACTACCA CGGCTACGGC TACTCCGACT
ACGACTGCCA CTACTGCAGT AACTACCACG GCTACTACAG TAGCAACGAC AACTACGGCA
ACCCCGCTGG TTGCCTCATT CACTGCATCT CCCACTTCGG GTACTGCGCC ACTCACCGTG
CAGTTTGAGG ATACATCCAC CGGCTCTCCA ACAACATGGG ACTGGAACTT TGGAGATGGC
GATTCAAGTA CCAATGAAAA CCCGTCATAT GCGTACACGA CTGCAGGAAC CTACACGGTC
ACCCTCAGTA TCGGGGATGG AGGCACGCTT CCCAGCGCAA CCAGCACTCA GACCACCACG
ATAACGGTAA GCGCGGGGAC TGTCACAACG ACCGTCCCGT CCGTGACAAG CATCTCCCCC
ACTTATGGCC CACTTTCCAC AGGCACTTCG ATAACCATCA CCGGGACAGG CTTTACCGGA
GCAACAGGAA TAACCATAGG GGGGACTGCA GTAACCAGTT TTACCGTTGT CAGCGATACA
GAAATCACCG CAACCACGCC GGCCATCTCC ACCGCCGAAC AGGTTGATGT CCTCGTGACA
ACACCCAGTG GCACATCCTC ATCAGTAGCC GGGGACAAAT ACACCTTTGC GGCTACAGCA
ACTACCGTCC CGCTACCCCT CTTTATCGCC TCACCCACAT CCGGGACGGC TCCGCTGGAA
GTAACATTTA CAGATGAGTC AACCGGCTCC CCGGCAACAT GGGACTGGAA CTTCGGGGAT
GGCAATACCA GTACGCTGCA GAATCCGACT AATACCTATG TAACCAATGG GACGTACTCA
GTGACCCTGA CAGAAGAGAA TTCGATTGGC ACAAATGCAA CAACCCTGAC CGGATACATC
ATAGTCGGAC CTACCATACC TGTTGCAGCG TTCACTGCAT CATCGCTCAG TGGTGCCGCA
CCCCTCACCG TCCAGTTTAC CGATACTTCC ACGGGGTCGC CCACATCCTG GGTGTGGAAC
TTTGGGGACG GAAGTACCGG CACTGCCCAG AATCCCTCAC ACGAATATAC GACATCAGGC
ACCTATACCG CCACCCTTAC TGCCACGAAC GCCGAAGGAA GCAGCACAAA TACCGCTTCC
CAGACCATAA CGGTTGGCTC ATCAGCGATG GCAACGGCCC CCACAACCGC GTATACAACG
GCACCCACCT TTGCAGTTGC CGCTGCACAA TCCACAACTT CTTCTGTGGA TGCCTGGCTG
GCAAAGCAAC AGGCCATTGC CACGGCAACA CCGACCCCTA AATCGCCGGG TTTTGACCTG
ATTGCAGCCC TTATCGGTTG CGGAGTTATT GCCGGTATTG ACCTGTACCG AAAACAGTAA
|
|---|
| Protein sequence | MNTRFIFLTG FVVLVCLACV VIPVGADNNT TATTTTTAVT TTATATPTTT ATTIVTTTAT
ATPTTTATTA VTTTATATPT TTATTAVTTT ATTVATTTTA TPLVASFTAS PTSGTAPLTV
QFEDTSTGSP TTWDWNFGDG DSSTNENPSY AYTTAGTYTV TLSIGDGGTL PSATSTQTTT
ITVSAGTVTT TVPSVTSISP TYGPLSTGTS ITITGTGFTG ATGITIGGTA VTSFTVVSDT
EITATTPAIS TAEQVDVLVT TPSGTSSSVA GDKYTFAATA TTVPLPLFIA SPTSGTAPLE
VTFTDESTGS PATWDWNFGD GNTSTLQNPT NTYVTNGTYS VTLTEENSIG TNATTLTGYI
IVGPTIPVAA FTASSLSGAA PLTVQFTDTS TGSPTSWVWN FGDGSTGTAQ NPSHEYTTSG
TYTATLTATN AEGSSTNTAS QTITVGSSAM ATAPTTAYTT APTFAVAAAQ STTSSVDAWL
AKQQAIATAT PTPKSPGFDL IAALIGCGVI AGIDLYRKQ
|
|---|
| |