| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0459 |
|---|
| Symbol | |
|---|
| ID | 5412151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 440121 |
|---|
| End bp | 444026 |
|---|
| Gene Length | 3906 bp |
|---|
| Protein Length | 1301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640867671 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001403620 |
|---|
| Protein GI | 154150002 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0784] FOG: CheY-like receiver |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.012558 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCG TCCTTTACGT TGACGACGAG CCAAATCTCC TCGACATAGG CCGGCTTTTC
CTCGAGGCGA CCGGTGAATT TTCCCTTGAC ACTGCGGTCT CGGCACAGGA AGGACTTGCT
GCCCTGGAAA AAAAACCGTA CGATGCCGTG GTCTCGGACT TCCAGATGCC AGGGATGGAC
GGGATTGAGT TCCTTAAGAT GATCCGATCG GGATATGGCC ATCTCCCGTT CATCCTTTTT
ACCGGCCGTG GCCGCGAGGA AGTGGTCATC AAAGCCATAG ACAGCGGCAC GGATTTTTAT
GTCCAGAAAG GGGGTGACCC CCGGGCCCAG TTTGCTGAGC TCGCCCACAA GATCCGGCAG
GCAGTAGGCC GGCGCTCAGC AGAGATCCTG CGGATCGCCT CCGAGAAGAG GCTTGCCGAT
ATCATCAATT TTCTGCCCGA TGCCACATTT GCTATCGATC CGACCGGGAC CGTGATTGCA
TGGAACCGCG CCATCGAGGA ACTGACCGGC ATTCCCTCAT CAGATATGGT GGGAAAAGGG
AACTATGAGT ACTCCCTGCC CCTGTATGGG GAACGCAGAC CGATCCTCAT CGACCTGATC
TTCTCTCCTC CCGATGAGAT CGGGAAAAAG TATGCCCATA TCGTGCGGGA CGGGACCATG
CTTGCCGCTG AGACCGAACT TCCTCGTGTG CGGGGGAAAC CGCGGATTCT CTGGGGCAAG
GCCGGACCAC TCTATGATCA GAACGGGCAG GTTACCGGGG CAATCGAATC CATCCGGGAC
ATCACCGATA GAAAAAAGGC CGAGCAGAGG CTTGCGGAGC AGTACCGCAT GCTCACTGAA
AGCACGTCCC GGCTCCGGCG GGCTGAAGAG GTGGCACGGA TCGGTCACTG GGAGCTCCAC
CTCGGGACCG GAACAATGTC GGCCTCAGAA AACGCTGCAG CGATCTATGG TGTGGATACC
ACCGAGCTGC CGATTGCTTA TGTCCTGGAA ATCCCCCTCC CGGAATACCG GCAGGCACTG
AACCAGGCGC TCGATGGACT GGTCAAACGC GGCGAACCTT ACAGAATCGA TTTTCGGATC
CGGCGCCCGC TTGACGGGAC GTTCCGGGAT ATCCACTCTG TTGCCACATA CGACCCCGAA
AAGCAGGTAG TCTTTGGCAT CATCCAGGAC ATCACCGAGC GCAAGAAGAT CGAGACCGAT
CTTGCGGCAA CAAATGAACA GCTGGCAGCT GCCGAGGAGG AACTGCGGGG GCAGTACGAT
ACCCTGGTAG AGAACCAGAA AGCACTTGCA GCCTCAGAAG AGCAGTACCG TGCGATCCTC
GATAATATTC AGGATATCTA TTACCGCACG GATAAAGATG GCACCCTCAT TATGCTCAGC
CCTTCGGGAG CCCTGCTTCT CGGGTACGCA AATACCGGTG AGATGATAGG GAGACCAGCC
ACGGATTACT ATGCAGATCC GGCCCAGCGG GATCTCTTTC TTACTGCGAT AAAAAAAGAG
GGAGTGGTCA CCAACCAGGA AATTACGCTG AAACGAAAGG ACAAAACACC CGTCACCGTC
TCCACCAGTT CCCATGCCTA TCTCGATGCT GCGGGGAGAT ATGCGGGGGT TGAGGGAATT
TTCCGGGATA TCTCGGATAT CAGGAAAGCC CAGCGGGAGC GTGAGACAGC CTATGAGCAG
CTTGCGGCAG CGGAGGAAGA GTTGCGGGGG CAGTATGAGG AGCTGGCGCG GAGCGAACAG
CAGCTTCGCG ACGATGCAGA GAACTTCCAG AACCTGGTAA CTTCTGCTCC CGATGCCATC
TACATCTCCA TTGGCGAGCG CTTTGTTTAC GTTAACCCTG CCATGGTTCG GTTGCTCGGT
GCGGTGTCCG CTGACCAGCT TATCGGCATG TCGCTGTATG ACCGCATCGC TCCGCAGTAC
CGCGCCGGTA TCCATGAACG GGCCCGGATC GTGACCGGTG AGCACAAGCC GGTTGGGCTC
AAAGAAACAG TATACCTGAA GATGGACGGA ACACCGGTGC CGGTGGAATC GTCCGTTGCA
CTCTTCCGCT ACCGGAACCA GCCTGCAGGA CTGGTCATTC TCCGGGATAT CACTGAGTAT
AAAAAAGCTG AGCGGGCCCG GAGGGAACAG GAGAAGAAGT ACCGTGTGGC GCTTGAAACC
ACCGGGACAG GATTTGTGAT CCTCGATAGT GCAGGAAAGG TACTCGATGC AAACCAGGAG
TATATTCGCC TCACCGGCCA CCAGGAACTC GGTGAAATTG CCGGGAGAAC GGTGACAGAC
TGGACTGCCG GGTACCATAA AGAGAGAAAT GCGGAGGCGG TCCGGCAATG CCTGAAAGAT
GGTTTTGTCC GCAATATCGA GATCGATTAC ACCGGTTCAT CGGGCATAAT AATACCGGTT
GAGATCAACG CGTCGGTGAT CCCTTCCGTT GATGGCATTC AGATACTTGC GCTCTGCCGG
GATATCACCG AACGCAGGAA GGCAGAATCC GCCATCAGGG AAAGTGAGAA AAAGTACCGA
GATATGTTTG AGATAAACAA CGCCGTGATG TTCATAGTTG ATCCGGTGGC CGGCAGGATC
GTGGATGCAA ATGCCGCTGC CTGCCGGTAC TACGGATATA GCCGGCAGGA ATTTGCAGGG
CTGGAAATCA CAAAGATCAA TGTTCAGGAT ACGGCCAAAA CAAAAAAAGA TATGGCACAT
GCTCAGGTAG AGCAGGGGGC GGTCTTCCGC TTCAGGCACC TGAAAAAAAG CGGGGAGATC
CGGGATGTCG AGGTATACAG TGCTCCTGTC ACGCAGGAAG GCCACCAGTA CCTCCATTCC
ATCATCCAGG ATGTGACCAG CCAGCGGCAG GCTGAAGAGG CACTCCGGGA GAGCGAGGAG
AAGTTCCGTG ATATCTTCAA TAACACTACC GATGCCATCC AGCTCCATGA GATTTTGCCA
GACGGTACTC CCGGCAGGTT CACTGACGTT AACGATATTG CCTGCCGGAT GCTCGGGTAT
ACCCGGGATG AGATACTTGC ACGGTCCCCG CAGGATATCA CAACGGCAGA GCACAATCCC
CCTCGGGAAA AGATCTATGA GGAGCAGCGT ACGCGGGGAC AGGCACGATT TGAAACTGAA
TTCGTGGCAA AGGACGGTAC GGTAATCCCT GTCGAGATCA ATACCCGTGT GGTTACCCTC
CAGAAAAAAA AGGTAATCCT TGCCATTGCC CGGGATATCA CTGAGCGCAA ACGGGCAGAA
ATGGCGATCC GGCAGGCAAA CCGGATGCTC AACCTCCTTA CGGGAATTAC CCGCCATGAC
ATAGGAAACC AGCTCACGGC CCTCTTCCAG TACATCGACC TCTCAAAGAT GATGGAGCAG
AACCCGGAAA TAAAATCGAT GATAGAAAAA GAGGAATTTA TTGCCAGAAA CATCCGGCGC
CAGATTGATT TTACCCGGGA GTATGGCGAG CTCGGAGCCG GCAATCCGGT ATGGCAGGAG
GTTTGCGGCT GCGTGGAAAA AGGAATCCAA GGCTTGGATC TGACCGGAAA AGAGATCGAG
ACCACGGGAC TGGTGTCCTT TGAGATCCTT GCCGATCCCC TTCTCCAGAA AGTGTTCTTC
AACCTCGTGG ACAATGCGCT GAGGCATGGT GGGCCTGGGC TTGGGCAGAT CCGGTTTTCC
TCCTACGAAA CCGGATCCGG GCTCATGGTT GTCTGCGAGG ATGACGGTAC AGGCATCCCA
CATAACCAGA AGGAACTCAT ATTCGAGCGC GGGTACGGGA AAAACACCGG CTTTGGCCTG
TTTTTCATCC GCGAGATCCT TGCGATCACG GGCATTACGA TCCGGGAGAC CGGGGAACCG
GGTCGGGGGG CACGTTTTGA GATGCTCGTG CCCCCGGGAG AGTACCGTAG AGCCGGGCCC
TTGTAA
|
|---|
| Protein sequence | MIRVLYVDDE PNLLDIGRLF LEATGEFSLD TAVSAQEGLA ALEKKPYDAV VSDFQMPGMD
GIEFLKMIRS GYGHLPFILF TGRGREEVVI KAIDSGTDFY VQKGGDPRAQ FAELAHKIRQ
AVGRRSAEIL RIASEKRLAD IINFLPDATF AIDPTGTVIA WNRAIEELTG IPSSDMVGKG
NYEYSLPLYG ERRPILIDLI FSPPDEIGKK YAHIVRDGTM LAAETELPRV RGKPRILWGK
AGPLYDQNGQ VTGAIESIRD ITDRKKAEQR LAEQYRMLTE STSRLRRAEE VARIGHWELH
LGTGTMSASE NAAAIYGVDT TELPIAYVLE IPLPEYRQAL NQALDGLVKR GEPYRIDFRI
RRPLDGTFRD IHSVATYDPE KQVVFGIIQD ITERKKIETD LAATNEQLAA AEEELRGQYD
TLVENQKALA ASEEQYRAIL DNIQDIYYRT DKDGTLIMLS PSGALLLGYA NTGEMIGRPA
TDYYADPAQR DLFLTAIKKE GVVTNQEITL KRKDKTPVTV STSSHAYLDA AGRYAGVEGI
FRDISDIRKA QRERETAYEQ LAAAEEELRG QYEELARSEQ QLRDDAENFQ NLVTSAPDAI
YISIGERFVY VNPAMVRLLG AVSADQLIGM SLYDRIAPQY RAGIHERARI VTGEHKPVGL
KETVYLKMDG TPVPVESSVA LFRYRNQPAG LVILRDITEY KKAERARREQ EKKYRVALET
TGTGFVILDS AGKVLDANQE YIRLTGHQEL GEIAGRTVTD WTAGYHKERN AEAVRQCLKD
GFVRNIEIDY TGSSGIIIPV EINASVIPSV DGIQILALCR DITERRKAES AIRESEKKYR
DMFEINNAVM FIVDPVAGRI VDANAAACRY YGYSRQEFAG LEITKINVQD TAKTKKDMAH
AQVEQGAVFR FRHLKKSGEI RDVEVYSAPV TQEGHQYLHS IIQDVTSQRQ AEEALRESEE
KFRDIFNNTT DAIQLHEILP DGTPGRFTDV NDIACRMLGY TRDEILARSP QDITTAEHNP
PREKIYEEQR TRGQARFETE FVAKDGTVIP VEINTRVVTL QKKKVILAIA RDITERKRAE
MAIRQANRML NLLTGITRHD IGNQLTALFQ YIDLSKMMEQ NPEIKSMIEK EEFIARNIRR
QIDFTREYGE LGAGNPVWQE VCGCVEKGIQ GLDLTGKEIE TTGLVSFEIL ADPLLQKVFF
NLVDNALRHG GPGLGQIRFS SYETGSGLMV VCEDDGTGIP HNQKELIFER GYGKNTGFGL
FFIREILAIT GITIRETGEP GRGARFEMLV PPGEYRRAGP L
|
|---|
| |