| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0355 |
|---|
| Symbol | |
|---|
| ID | 5411121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | - |
|---|
| Start bp | 347586 |
|---|
| End bp | 349376 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640867569 |
|---|
| Product | type III restriction enzyme, res subunit |
|---|
| Protein accession | YP_001403518 |
|---|
| Protein GI | 154149900 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.098863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.390536 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTG AATTTAAACA AGGTCTTAAT TTGTTAAATT ATTTGTTAGA CCTTGGATTT
AAAACTCGCA AATCCGATGA ACTTGAATGT ATATCATATA ATGTGAATCT AAACCTTGCT
ATTCGTCTCT TCTCTGAATA TCCACATATT AGAAAAATCA TTTTTCATGC AAATTCCCAA
AATTTTTCCA TTTCAACGGA ACAAAGGGGT CAACTTTTAA AATTAATAGA ATCAGAAAAA
ATTGTGATCA ATCACATTTC AAGAAACGAA CTTTGTATTC ATTCAAAGGT ATATCGTTTC
AAAAAAGATG GAAATTTCAC ATTGGGGGCA ATAACATCAG CCAATTTTTC CGAGAATTCC
AACCTTAATT TTGAATCAAT GTATATTAGC GAAAGATTAG ACTTCATCGA AGACCTTGGA
AGTGGAGTAG CTGAAAAGTT ACAACTATAT GAAATAAAAG AGAAAAAATC ACTTCCTGAA
TCAATCGTTC AAATACTTGA TTCGGATCGA AAAATTGATA AACGATTTGT TGAGGGGCTG
TGGGTTCATC AGCAGGCAAT CCTTGAATGG CTTGCCCTTC GACGAAAAGG GATTGTCAAT
ATTCCCCCGG GTTGTGGAAA ATCTCGGATA GCAATAAGAT ATATTCAGTA TTTATTTAAC
CGAAACAGAA AAACAACAGT GATAATCTTA GTCCCTACAA TTACTTTGAT CAATCAATGG
AAACAAATTT TAAAAAATGA GGGAATTGAT GCGTTCGAAG TAGATATGGA TATGAATAAT
ATCGGTCAGT ACTTTGCAAA TCCCACTGAA AAAGTGATTA TAACACTTTA TTCAAGATTT
TTTGAGAAAT ATCCGATAAT TTTACAAAAA ATCAGTATGT TCAAGCCAGA CTTATTGACT
ATTTCTGATG AATGCCATAA TCTTTATAGC AGCCTCGAAG ATCTCGAACG CTATTATTCT
CAAATTTTGA GGTCTGGTAC TCCGTTTAAA CAAAGTTATT TCCTCTCATT ATCAGCTACC
ATTGATTCTT TTATTCAGGA AAATGTTGAC CGATTTATTG CATTAAATGG TGGCGAACAA
AATCGTTTTT CTATCTCAAT ACCCAGTTTC TATAGTTATT GGAATAACCT CAATAAGACA
CCCTGTTTGA AGCCCATCAT GTATCAACCC CTGTATTATA ACTTAAGCCT TTCAGAGATG
CAAAAATATC TAGAGTTAAG CCGGTTTGTG GGGATAGAAT CTCAAAATGT CACACTCCAA
GGAGATAATT CATTTGACGC TGCGATTAGA AGGGCACAAT ATGTAAGGGG TCTTGAAGGG
AGTTACAAAA TATTAAAAAG TTATATTCAA ACACATATCG AAGCCTTCAA TCGCGGTAAT
ACAATCATTT TTGTCCCAAC ACATGAATTT GCTGAAGAAT TAAGAACATT TTTAGTTAAT
ACTAAAGGAT GGAATCCAAA ATCTTCTGCA TATGTATACG ATTCAAAAAA ATCCGATATG
TATCTTCAAC ATGCGTTAGA ACAATTCAAA AATAATCTTG GTTTTTGCTT GATTTCAGAA
ATCATGTTGT CAGAAGGATT CGACATCCCA GTGATATCCC GGGTTGTTTT ACATGGATCG
CACAAATCAC AAAGAGACTG GATCCAAAAA ATAGGAAGGG CAATTCGATT CGATCCAACA
AATGAGAGTA GCCTTGCTGA AGTAATTGAT TTAGTTTTTT GCAATCCCAC TGGGAAAGTG
TTACCTATTG AAGAAGAGAG ATACGAAACA TTAAAGTCGA TTTCTAAATA A
|
|---|
| Protein sequence | MDFEFKQGLN LLNYLLDLGF KTRKSDELEC ISYNVNLNLA IRLFSEYPHI RKIIFHANSQ
NFSISTEQRG QLLKLIESEK IVINHISRNE LCIHSKVYRF KKDGNFTLGA ITSANFSENS
NLNFESMYIS ERLDFIEDLG SGVAEKLQLY EIKEKKSLPE SIVQILDSDR KIDKRFVEGL
WVHQQAILEW LALRRKGIVN IPPGCGKSRI AIRYIQYLFN RNRKTTVIIL VPTITLINQW
KQILKNEGID AFEVDMDMNN IGQYFANPTE KVIITLYSRF FEKYPIILQK ISMFKPDLLT
ISDECHNLYS SLEDLERYYS QILRSGTPFK QSYFLSLSAT IDSFIQENVD RFIALNGGEQ
NRFSISIPSF YSYWNNLNKT PCLKPIMYQP LYYNLSLSEM QKYLELSRFV GIESQNVTLQ
GDNSFDAAIR RAQYVRGLEG SYKILKSYIQ THIEAFNRGN TIIFVPTHEF AEELRTFLVN
TKGWNPKSSA YVYDSKKSDM YLQHALEQFK NNLGFCLISE IMLSEGFDIP VISRVVLHGS
HKSQRDWIQK IGRAIRFDPT NESSLAEVID LVFCNPTGKV LPIEEERYET LKSISK
|
|---|
| |