| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3975 |
|---|
| Symbol | |
|---|
| ID | 5385652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 4459699 |
|---|
| End bp | 4460379 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640867006 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001402923 |
|---|
| Protein GI | 153949914 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 59 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCCCG ATTTTAACTG GCAAGAAATT GATACCGTAC TGCTAGATAT GGATGGCACC
CTGCTGGATT TGGCGTTCGA CAGCCATTTC TGGTTAAAAT TAGTGCCAGA AACCCTGAGC
CAACGCAGAG GGATCCCACT CGAACAAGCG CACAAAATCA TTCATGATGA ATATAACGCG
GTACAGCATA CCTTGAATTG GTATTGCTTC GATTACTGGC GCGAACGGCT GGATTTAGAT
ATTTATGCCA TGACCACGGA TATCGGCAGC CGGGCACGCT TACGTCAGGA TACCGTGCCA
TTCTTATCTG GTTTGCGTCA GCATGGTCTG CAAACCATTT TGCTCACCAA TGCCCATCCA
CATAGTTTGG CAGTAAAAAT TGAGCACACC GCCCTTGACC AGCACCTTGA TTTATTGCTT
TCCACCCATA CATTTGGTTA TCCGAAAGAA GATCAACGGT TGTGGCAAGC GGTTACGCAG
CATACCGGGC TGAACCCCGC CAGAACATTG TTTGTCGATG ATAGTGAAGC GATTTTGGAT
GCGGCGCAAA CCTTTGGTAT CCGCTACTGC CTGGGGGTAG AAAACCCTGA CTCCAGTTGT
GCTGATAAAA CCTTTCACCG ACACCCGGCA ATCAATGACT ATCGTAAACT GTTGCCCGCT
TTACAGTTAC GTTGTGAATA A
|
|---|
| Protein sequence | MPPDFNWQEI DTVLLDMDGT LLDLAFDSHF WLKLVPETLS QRRGIPLEQA HKIIHDEYNA
VQHTLNWYCF DYWRERLDLD IYAMTTDIGS RARLRQDTVP FLSGLRQHGL QTILLTNAHP
HSLAVKIEHT ALDQHLDLLL STHTFGYPKE DQRLWQAVTQ HTGLNPARTL FVDDSEAILD
AAQTFGIRYC LGVENPDSSC ADKTFHRHPA INDYRKLLPA LQLRCE
|
|---|
| |