| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3734 |
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| Symbol | |
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| ID | 5386650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 4209185 |
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| End bp | 4210777 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640866758 |
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| Product | type IVB pilus formation outer membrane protein |
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| Protein accession | YP_001402688 |
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| Protein GI | 153947286 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
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Plasmid Coverage information |
| Num covering plasmid clones | 61 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATTGGT ATTCCGTAGC CCGAACCTCG CGCCTCATTG GTGTGGTACT CAGTCTAAAA
TTTTTGATTG GCTGTTCACT TAGTGAAATT GACCGGATAG AAAGCCTGGC AAAAGATAGC
GGCGAAACCG CTCGGCGTAT TACGGATAGC AATGGCGCTA AAACTCAGCC TTCAGTGACT
TGGGCCGATA AGCCGTGGGT GAATTTGAAA CCGCTCACAC CTGCTGCCGC AAGCCCTGAA
GAGAAAATGC TGCTTCCTTG CCAGATAACT ATCAACCGCC CTGAAGGCAT GAGTCTACCT
GAACTGGGGC AGCGTATTAC CCGCTTGTGT GGTGCCCGCG TGACCATCAC ACCAGATGCC
TTTTTGGCTT TATCGTCTGC TAACGCCAGT TTCGACATGA TGCCGTCCGG CAAGCATATT
AATGCACTGA AATGGCAGGG TGATTTGCCG GGTTTGTTGG ACACCATCGG CAGTCGTTTG
GGGCTATCAT GGCGTACTGA CAAAGGTAAT ATTGTCTTTT ATCAATTGGA TACTCGAACT
TTCCAACTCG TCATCCTTAA TACCAAAATT AGCAGCTCCG CCAGTGTAAC GTCAGGATCC
TCCAGCTCGA TGGGCTCAAG CGGCGGAGCC AATAGTGGTG TGTCTGGCGA TTCGAGTTCC
GTACAGAAAA CCTCGGTTGA TCTGAACAGT AATCTCTACG AGGACATTAA AAAGACGATT
GAGAATATGC TGACACCGTC TAAAGGGCGC TTTTGGCTCT CTTCTGCCAG TGGTACCTTG
ACGGTGACGG ACACGCCTGA AACCCTAGAG CGGATAGGGC GTTATATCGA CCATCAGAAT
GAGCTTCTCA ACCGCCAGGT TCAGCTTAAT GTTCAGGTTT TGAGTGTTAC CCAGTCGCGC
AAGGAGCAGT TTGGTCTGGA CTGGAAACTG GTGTATCAAT CGTTAAACAA TATCGGTGCC
AGCGTGACGG GAAACCTGAT TAACGTGGCA AATAATACCC TCTCCGGTGG TCTGTCTATT
CTGGACACTG CGACGGGGCC CGCAGAGAAG TTTTCTGGAT CGGAGCTGCT GATCAAAGCG
CTTTCTCAGC AGGGTAACGT CAGTTTGGTC ACGGAACTCA ACAGGGCGAC AATCAACCTG
ACACCGGTAC CGTTCCAGAT CTCCGATCAA ACGGGATACA TACAAAGCTC AAGCACGACG
GTAACCGCCA ACGCGGGTAC TACATCGTCA ATGCAGACCG GCATTATAAC CACGGGCCTG
TTTATGTCGA TGTTGCCTTA CATTCAGGAA AATGGCGATG TACAGCTCCA GTTTGCTTTC
ACTCTTTCGG ACAAACCCAT CATTCAGCCT TTCTTTTCTC GTGATGGTAA TACGCGCAAT
GACACCCCTG CGTTCAAACT TCGTTCACTT ACCCAAACAG TCAATCTGCG CGCGGGCCAG
ACATTGGTGC TGACCGGGGC CGATCAACTT GACACCGTAG CCAATAAACA AGGGGCATTT
ACCCCCAGTA ACTTCTGGTG GGGCGGCGGT CATAACGGTC TGGAAACCCG TACCACGCTG
GTTATTCTTA TTACACCGGT TCTGCTGAGG TAA
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| Protein sequence | MHWYSVARTS RLIGVVLSLK FLIGCSLSEI DRIESLAKDS GETARRITDS NGAKTQPSVT
WADKPWVNLK PLTPAAASPE EKMLLPCQIT INRPEGMSLP ELGQRITRLC GARVTITPDA
FLALSSANAS FDMMPSGKHI NALKWQGDLP GLLDTIGSRL GLSWRTDKGN IVFYQLDTRT
FQLVILNTKI SSSASVTSGS SSSMGSSGGA NSGVSGDSSS VQKTSVDLNS NLYEDIKKTI
ENMLTPSKGR FWLSSASGTL TVTDTPETLE RIGRYIDHQN ELLNRQVQLN VQVLSVTQSR
KEQFGLDWKL VYQSLNNIGA SVTGNLINVA NNTLSGGLSI LDTATGPAEK FSGSELLIKA
LSQQGNVSLV TELNRATINL TPVPFQISDQ TGYIQSSSTT VTANAGTTSS MQTGIITTGL
FMSMLPYIQE NGDVQLQFAF TLSDKPIIQP FFSRDGNTRN DTPAFKLRSL TQTVNLRAGQ
TLVLTGADQL DTVANKQGAF TPSNFWWGGG HNGLETRTTL VILITPVLLR
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