Gene YpsIP31758_2680 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_2680 
Symbol 
ID5386016 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand- 
Start bp3034829 
End bp3035473 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content38% 
IMG OID640865670 
Producttranscriptional regulator 
Protein accessionYP_001401645 
Protein GI153950327 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.00609621 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCACT GTGTTGTTTT AAATAAATTA GAAAGTGTGT TAATAATTGG TGACAGTAGA 
TATGCTTTAT CCAAGAATGA GGTGCTGCTG TTAGAGTGTC TTTATTTACG TGCCGGTGAT 
GTGATCTCCC ATGATGAATT ACTGACAACC TGTTGGCCTG ATCGAGTCGT CTCCCCAACA 
TCACTGCCGG TTGCTATTAA ACATATCCGT GATGTATTCC GTAAAATAAC CCGGAGTGAG 
GTGATAAAGA CATATAAGAA TGAGGGCTAT AGCTATCAAA AGGATAGTGT ACTAATTATT 
ATTGATGATG GCAGCACCGA AAAAGAGAGT CATAGCGCAG CATATACCAG AAAGGAAAAA 
CCCGACATAC CAATAAAATT GGTTGGATTA CAAATACTTT CTCACCTGAA CTCAACCTTT 
TTTATCGCTA TTATGATGGT CATCATCATC ATATTTTTCA TGGTAGGAGG TAATGATATT 
GTCTCATTTA TTGATAGTGA TACCAACAGT GTCATTATAA CGAATGTGAC AACCAAGATG 
AATGGCCCAA CGGCAGGCTT ACCGAAGGTG AAGAATAGTA TGATATTTAA GGATGATTTT 
GGTTTAGTCA TTATCTGTGA TCAATCGGAA TGCAAACAGC AATGA
 
Protein sequence
MSHCVVLNKL ESVLIIGDSR YALSKNEVLL LECLYLRAGD VISHDELLTT CWPDRVVSPT 
SLPVAIKHIR DVFRKITRSE VIKTYKNEGY SYQKDSVLII IDDGSTEKES HSAAYTRKEK 
PDIPIKLVGL QILSHLNSTF FIAIMMVIII IFFMVGGNDI VSFIDSDTNS VIITNVTTKM 
NGPTAGLPKV KNSMIFKDDF GLVIICDQSE CKQQ