Gene YpsIP31758_2163 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_2163 
Symbol 
ID5385780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp2487935 
End bp2488465 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content49% 
IMG OID640865149 
Productfimbrial protein 
Protein accessionYP_001401136 
Protein GI153948801 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3539] P pilus assembly protein, pilin FimA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones54 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAA CTTTAGTGAC GTTGATGCTA TTTATCCTGC CGGGTATAGC TTTTGCGGAA 
ACCTCGAACA ATACCATAAA GTTCCAGGGA GAAGTCGCAG AACAGACCTG TATGGTGGAT
ATCAATGGTA CCGCCAACAC CCCGGTGGTT CTGCTGCCGA CTGTCTCGAC CAGTAACCTT
AATCAAGTCA ACTCGGTGGC GGGAAAGACC AACTTTACGA TCAATCTAAC AGGCTGCAAT
ATTGCGATTC AAGATACCCA AATCAGCTCT GTTTTTCAGG GGATGAATGT CACGTCTGGC
GGAAACCTGG GCAATATTGG CACAGCAAGA AATGTTGCCA TTCAATTAAT TGATCCCCGT
GGCACCCCGA TTCGTATGTC TGGTGGCAGT GTGGAAGTTC CGGGAATTAC CTTGGCGACT
GGCGCAACCT CAGCATCACA GGATCTGTCG GCACAATATA TAACGGAAGA AGGCCAGGCA
ACCGCAGGCA GTGTTATTGC CTCTGCACAG TATGCGATCA CCTACCCCTA A
 
Protein sequence
MKKTLVTLML FILPGIAFAE TSNNTIKFQG EVAEQTCMVD INGTANTPVV LLPTVSTSNL 
NQVNSVAGKT NFTINLTGCN IAIQDTQISS VFQGMNVTSG GNLGNIGTAR NVAIQLIDPR
GTPIRMSGGS VEVPGITLAT GATSASQDLS AQYITEEGQA TAGSVIASAQ YAITYP