| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1179 |
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| Symbol | |
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| ID | 5384480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 1384916 |
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| End bp | 1389541 |
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| Gene Length | 4626 bp |
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| Protein Length | 1541 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640864157 |
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| Product | putative autotransporter protein |
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| Protein accession | YP_001400161 |
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| Protein GI | 153949449 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.599908 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACA GTAATACTCT TAATACGCGT CTGCTACCAC TGTCTATTTT AATTTCATCG
TTGGTTTCTG GCGGGGCTAT GGCTGTGTCA CAAATAGCAA CCACTGATAC ACCCGCAGTA
ACACCAATAA AATCAACACT AACAGGTCCA TTTGAGCGGA ATTCGTCTGG TACAAGTTTT
GGATCAAATG TAGATGTAGA TGTAATTGAT AATACATCTA CGCCAACCCG CGTGATTGCT
GAAACTACGC CGGAAGCCGA GAGCACAATT GGTGAAGCGA CTGGGCAAGA AAGCGGTAAC
GCAACAGCCG TTACCCCCCC TACTACAACA CCAGAGCAGG AAATCACAGA ACCTGAACAA
CCAGGCCTGC TTGATAAGAT CACAGAACTG CTGGGATTGG GTGAAATTAC TCAAAAACAA
GCCGATGCAT TAGAAAAAAA CGTTAAGGCT AAAGCTGAAA AAGTGAAAGC GCAAGCTGAC
GCACAGAAGG TACTTGATGA GGCAAAAGAA CTGGCCCAAA AAGAGGCTGA AAATGTAGCA
ACTTTAGAAA AGGACAATGC TCTCAATCAG GAACTAGCTT ATATTCAAAA TAACGCTAAA
AATGAAGCTA ATATAGAAAA AATTAGGCGA GACAAGTCTA AAGAAGACGC CATTAAGGCC
GTCATTGTTA ATAATGCTCC ATTAGTTCCT ACTGCTCTGG ATATTGCAGA TCAAGTCACC
AAAGCCGTGG CCACAACAAC ACAGGCACAA AAAGAAAAAG CAGTTGATCT AGATGAAAAA
ACAACTCTAG CCAAAGAAGC CCTAGACAAG AAAGAAGAGA ATACAGCGGC GCTTGAAGAA
ATCAAAGGGC GGCTCGGTAC TGTCACAAAA GATTTAGAAA CAGCGACAGA TATCGATAAG
CCAGCGCTAG CTGAGTTAGT CGTAGAGGCT AAAGCAGCTC AAGCCACCGA CGAAAAGAAA
CCTTCTACCG CGATTGCCAT AGCTAAAGCG GCTGATGTGA GGACAGAAGC TGAGCTTAAC
AACAACACAG ATACCGACGA GGGCAGAGCA AAAAAAGCCG AAGCAGTTAA GAATAGAAAA
GAATATGAGC GATTAGCTGC AGAATATGAG GAGAAAATCG CCGAGGCCGA AAAAGCAGTT
AAGGCTATTG ATGCAAAGAT AGAAGAATTA ACAAAAAATC AAGGTCTTAT CAAAAAAGAA
CAAAGTACCG AAGATGCCAA AACAGCTGAT TTAGATTCTA CGCTCAAAAA GGCTAACAGC
GCTAAAGTCG CAGCACAGGG TGAATTCGAC AAGGCAGAGA CAGCAGCTAA ATTAGCTGAA
GCAGCAGCAA AGGCTATCGA AGCAGCAAAA CTCACCGATA AGGCAGTTGA GGATGCAACA
GCAGCTCATA AAGAAGCCGC AGACAAAGCG GAACAAACTA AAGCAGCCGT TGAAGCGGCT
GAAAAAGTTA AAACAGAAGC TGATAAACTC GTAGTCACTA ACACTGGCCT ATTGAATGAT
GCTGACCAAG CACTTGAGCA GTTAATTGCC GACCAAAATA GCGTCAAACC TACAACTACT
CTACCGACCA TTGATGTGAC CATTGCGCCT ACCGAGACAC AAGATGTGAT TGAGGGCACC
AGCGCCATTG CCACCCAAGT GGCCGGTGGC ACACAAAATG TAGACAAGGG CGGGAAAGCG
ATTGATAGCG TTATTACCAA AGACGGTATC GTAAACCTTG CTGCTGGTGC CAATGCCAAA
GGGACCAAGG TTACTAAAGG TACCCTGAAC AACAACGGCG GGGTTGATAC CGATACTGTG
GTGGATGCTG AAGGTAAATT AGTTCTGACG GGTAGCGAAA CGGCCATCGC AACCTCAACT
GGTGCAACGA TCGCTAAAGG CGGTGTAGTG ACCGCAGGTG ACCATTCCGT TATCAAAAAA
ATGATCAGCA GTGGTGACGT GGCCGCCAGC GGCAATGCCA TCGTGCGTGA TACGACCATT
AATGACGGTA AATTAAGCCT GACAGGCACC GCAACCGCCA ATAACACCAC GTTCAACGGC
GGTATTTTCA GCATTGAAGG TGATACCACT GCCACCAAGA CTAACATGAC TGGCGGTGAA
TTTGCTGTGA CAGGCAATGC CAAGATCGAA GAGACGGTAG TCAGCGCGGG TGACGTTTCA
CTGGCTGACA ACGCCACCGC GAACAACACC ACACTGACTG GCGGTACCTT CACCGTTGCA
GGTGATACCA CTGCCACCAA GACTAAGATG ACTGGCGGTA AATTTGCTGT GACAGGCAAT
GCCAAGATCG AAGATACGGT AGTCAGCGCA AGTGACTTCT CGCTGGCTGA CAACGCCACC
GCGAACAACA CCACACTGAC TGACGGTACC TTCACCGTTG CAGGTGATGC CGCAGTCACC
ACCACTAACA TGACTGGCGG TAAATTTGCG GTTAAAGGCA ATGCCATAAT CAAAGATACC
GTGCTCAGCG CCAGTGACTT CTCGCTGGCT GACAAAGTCA CCGCAAACAA CACCACCCTG
ACTGGCGGTA CCTTTACCGT TGCAGGTGAT ACCGCTGCCA CCAAGACTAA GATGACTGGT
GGTGAATTTG CTGTGACAGG CAATGCCAAG ATTGAAGACA CCGTACTCAA CGCAAGTGAC
TTCTCGCTGG CTGACAAAGC CACCGCGAAC AACACCACCC TGACTGACGG TACCTTCACC
GTTGCAGGTG ATGCCGCGGT CACCGCGACG AACATGAGTG GCGGTAAATT TGCGGTTAAA
GGCAAAGCCA AGATCAAAGA CACCCAACTC AGTGCAGGTA ATTTCACTCT GGCTGAAAAT
GCCACAGCGA ATGACACCAC ACTGAATGGC GGTAAATTTG ACGTTTCGAA CGAGGCTACA
GCGACTAACA CCACCCTTAA TAGCGGCCTG TTTACGCTGA AAGATGGCGC TCACGCGGAC
AACACCACGG TCAATAGCGG CACCTTCGTC ATGGCCGATC AATCTACGGC CAACGGCATC
CAACTGGTAG ACAGCGCCTT CACACTCGCA AGCGGCGCTA AAGTCTCCGG TACCACCAAA
TTAACTGGCG GTCAGGCACA GGTAGCCGGT TCACTGGAAA ACTTGAGCCT TACCGGTGGC
CGCGCAGACT TTGCCAACAG CGCCAAAGCC TCTGGCCTGC TTGATATCAG CGCTAATAGC
CAGCTCAGCA TGAACCGCGG TGCAGATACC GCACAAGCGA ACCTGAACCT GGCTGGCCGC
CTTGAATTGC TCGCCAGCGA TGTTACTCAG GCGGTGGCTC AGCCAACTGC CCGCGCAGCC
ATGGAGTTAT CAAATGCGCG TGCGGCAATG CCTGCCCCTG CAATGCCAGT CCCTGCCGCC
GCACCAGTTG CACAGTTCGC CCTCAACGAT GTAGTTATGA CCGGGGGCAC TGTCGATATG
AGCAACGCGA AAAATGCTCA ACTGACCATG GCTTCACTGA ATGGTACAGG GAACTTTAAC
CTCGGTTCTG TCATGCAAAG CGATTCGGTC GCGCCATTAA ATGTATCCGG TGACGCGAAC
GGTGACTTCA TCATTGCAAT AAATAGCAGC GGTCAAGCAC CAACTAACCT GAATGTGGTT
AATACCCACG GTGGTGATGC ACGCTTTGCC TTAGCCAATG GCCCGGTTGC TTTAGGTAAC
TACATGACCA ACCTGGCTAA AGACGCCAAC GGTAACTTTG TCCTGACCGC AGATAAATCG
GCTATGACAC CAGGTACCGC CGGTATTCTG GCCGTGGCTA ACACCACACC GGTTATCTTT
AACGCTGAGT TAAGTTCTAT TCAACAGCGT TTGGATAAGC AAAGTACAGA AGCCAACCAA
AGCGGTATGT GGGGCAGCTA CCTGAACAAC AACTTTGAAG TGAAAGGCCG CGCCGCTAAC
TTCGATCAGA AGTTGAACGG GATAACATTG GGTGGCGATA AAGCCACTTC ACTGGCAGAC
GGTGTGTTGA GCATTGGTGG TTTCGCCAGC TACAGCAGCT CTGATATCAA AACGGATTAT
CAAAGCAAAG GTAAAGTGGA TAGCCATTCA TTCGGTGCCT ACGCACAATA CCTGGCTAAC
AGCGGTTACT ACATGAACGC GGTAGTGAAG AATAACCAGT TTAGCCAAGA CGTTAACATC
ACCTCAATTA ACGGTAGCGC CAGCGGTGTG TCTAACTTCT CGGGTATGGG TATCGCACTG
AAAGCCGGTA AGCACTTCAA CTTCAATGAG GCTTACGTCT CGCCATACGT TGCAATGAGC
GCCTTTAGCT CGGGTAAGAG CAACATCTCC TTGTCTAACG GCATGGAAGC ACAGAGCAGC
AGCACCCGCT CTGCGATAGG TACCCTTGGG GTGAATGCAG GTTACCGCTT CGTGATGAAC
AACGGCGCAG AACTCAAGCC ATACGCTATC TTCGCGGTGG ATCATGAGTT CGCGAAAAAC
AACCAAGTGA CGGTGAATCA GGAAGTGTTT GACAATAACT TGAGCGGGAC CCGTGTGAAC
ACCGGCGCCG GCATGAACGT CAACATCACC CCTAACCTGT CTGTCGGTTC TGAAGTGAAG
TTGTCCAGCG GTAAAGATAT CAAAACACCA GTAACCATCA ATCTGAACGT GGGTTACAGC
TTCTAA
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| Protein sequence | MKNSNTLNTR LLPLSILISS LVSGGAMAVS QIATTDTPAV TPIKSTLTGP FERNSSGTSF
GSNVDVDVID NTSTPTRVIA ETTPEAESTI GEATGQESGN ATAVTPPTTT PEQEITEPEQ
PGLLDKITEL LGLGEITQKQ ADALEKNVKA KAEKVKAQAD AQKVLDEAKE LAQKEAENVA
TLEKDNALNQ ELAYIQNNAK NEANIEKIRR DKSKEDAIKA VIVNNAPLVP TALDIADQVT
KAVATTTQAQ KEKAVDLDEK TTLAKEALDK KEENTAALEE IKGRLGTVTK DLETATDIDK
PALAELVVEA KAAQATDEKK PSTAIAIAKA ADVRTEAELN NNTDTDEGRA KKAEAVKNRK
EYERLAAEYE EKIAEAEKAV KAIDAKIEEL TKNQGLIKKE QSTEDAKTAD LDSTLKKANS
AKVAAQGEFD KAETAAKLAE AAAKAIEAAK LTDKAVEDAT AAHKEAADKA EQTKAAVEAA
EKVKTEADKL VVTNTGLLND ADQALEQLIA DQNSVKPTTT LPTIDVTIAP TETQDVIEGT
SAIATQVAGG TQNVDKGGKA IDSVITKDGI VNLAAGANAK GTKVTKGTLN NNGGVDTDTV
VDAEGKLVLT GSETAIATST GATIAKGGVV TAGDHSVIKK MISSGDVAAS GNAIVRDTTI
NDGKLSLTGT ATANNTTFNG GIFSIEGDTT ATKTNMTGGE FAVTGNAKIE ETVVSAGDVS
LADNATANNT TLTGGTFTVA GDTTATKTKM TGGKFAVTGN AKIEDTVVSA SDFSLADNAT
ANNTTLTDGT FTVAGDAAVT TTNMTGGKFA VKGNAIIKDT VLSASDFSLA DKVTANNTTL
TGGTFTVAGD TAATKTKMTG GEFAVTGNAK IEDTVLNASD FSLADKATAN NTTLTDGTFT
VAGDAAVTAT NMSGGKFAVK GKAKIKDTQL SAGNFTLAEN ATANDTTLNG GKFDVSNEAT
ATNTTLNSGL FTLKDGAHAD NTTVNSGTFV MADQSTANGI QLVDSAFTLA SGAKVSGTTK
LTGGQAQVAG SLENLSLTGG RADFANSAKA SGLLDISANS QLSMNRGADT AQANLNLAGR
LELLASDVTQ AVAQPTARAA MELSNARAAM PAPAMPVPAA APVAQFALND VVMTGGTVDM
SNAKNAQLTM ASLNGTGNFN LGSVMQSDSV APLNVSGDAN GDFIIAINSS GQAPTNLNVV
NTHGGDARFA LANGPVALGN YMTNLAKDAN GNFVLTADKS AMTPGTAGIL AVANTTPVIF
NAELSSIQQR LDKQSTEANQ SGMWGSYLNN NFEVKGRAAN FDQKLNGITL GGDKATSLAD
GVLSIGGFAS YSSSDIKTDY QSKGKVDSHS FGAYAQYLAN SGYYMNAVVK NNQFSQDVNI
TSINGSASGV SNFSGMGIAL KAGKHFNFNE AYVSPYVAMS AFSSGKSNIS LSNGMEAQSS
STRSAIGTLG VNAGYRFVMN NGAELKPYAI FAVDHEFAKN NQVTVNQEVF DNNLSGTRVN
TGAGMNVNIT PNLSVGSEVK LSSGKDIKTP VTINLNVGYS F
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