| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1177 |
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| Symbol | |
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| ID | 5385348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 1381005 |
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| End bp | 1384358 |
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| Gene Length | 3354 bp |
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| Protein Length | 1117 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640864154 |
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| Product | putative autotransporter protein |
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| Protein accession | YP_001400158 |
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| Protein GI | 153948615 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCTC GCTCTAACTT AAACACACGT TTATTGCCGT TATCTATTTT AATTTCCTCA
TTGATATCTG GTGCCGTACT GGCAGCACCT TCGGTCGCAA TACCACCGTC GGTTCAAGAC
CTCATCAACC AAGTACAGTC TTATGCCAAT GCGCACGTGA TCAGCCCAGA ACAAGCGGAA
ACACTGATTA AGCGCTTAAC CGTTACTCCC GAAAAACTCA AAGAAGAAGA AGCACGGGTG
AAACAAGAAC TGGCAGCGGT AGAAAAAAAA CAAACAGAAG CAAAAAAAGA GATTATTACC
ACCAGTATTG AAAAAGATCA GTTTAATAAA GCGCTTAACA ACACACAAAA GGCTAAATTG
GCGGCTGAAA CTGTATTCAT TAACGCTAAC AGTAAGCAAA ACGAGGCGAT TAAAGCAGTC
AATAAAAATT GGAGCCTAGC GGATGAAAAT ATCAGTACAA AGCTTTCTGT AATAGTTAAT
GGCGAGAGCA AGACACAGGC CATTTTAACA GAAAAAATAA AATTGACTGA AATCGCCAAC
ATCAATCAAC AAGAACAAAT AATCAAAGCT CAACAACTGG ATGCAGACAT TCAGCAGATT
AAATCTGCCC TTGCTGATGC GGAGAGTAAT GGAACAACAG GCACCCTTGT ACTACGACAA
AAACTGGCGC AGGCCGAAGA AAAGCTAGAG ATAGCTAAAA ATAACCCTAA ATCTAAACTC
TTCGACGCTA AAGCGGCACA TGACCGAACC AGTAAAAACC TTGAGGGCCC AGAAGGTTTA
GCGAAAAGAG CAGCGATACA AAATAAAAAG GTTTATGAAC AGGAACTTAA AGTTCTTCAA
GACCCCATAG ACGCAGCAGA AGAGCAATTA AATACCGCTC AAGAAAATAC GTTTGCATTA
ATGGATAAAC AGTCCGCTCT TGCTGGCCAA AAAATAAATA GCATTGCGCT AACCAACAGC
CTACAAGAAG TGTTTAAACA GGCTAAAAAT GCCCAACTGC AAGCGGAACA AGCCGCACAA
CAAGCGAAAG ACGCGACAAC AGCGCAACAA GCGATGGCAG AGGCCGCAGC AGCGGAGAAG
TTACTTCAGG AAGTAGAACA AAAAATCACC ACCATTGCCG TTATCGCACA GGAAGCTGAG
GCGAAATTAA CTGCTGCCCA ACGGGCTAAA GCGGATGCTG AGTTACAGTT AGCCGATAAA
ATGGAACAAC TGGCAAACAT TAACCTAGAC CTTACGGCAC TGAATAACCT CGATCCCAAG
GTGATCAGCC AACAGACCCT CGCCAAAGGC GAAGCGCAAC CTGTTGCTGA TGGCGAACTG
GCCATGGCAA TCAAGGTGGC GGGCGGTGAG CAGAATGTCA CCACCGGCGG TGTGGTGTTA
GCCAGCGTGG TCACCGAAGA CGGCGTGGTT AACCTGAGCG ACAATGCACT GGCGCACGAT
AGCCAACTGA TCAACGGTAC GCTGAATAAT ACCCGCGCCC ATGATGTGAA TACTCAGGTC
GGCGCACAAG GCAAATTACT GATCAACGGC ACCCAGGAAG CGGCTGCCAC CTCGGAAGGG
GCAACGGTGG CCGCAGGCGG CAGCGTCACT GCTGGCACGA ATGCCCTGGT CACCAAGATG
GTCAGCGCCG GTACAGTAAC AGGTAACGAC GGCGCTCTGT TTACTGAAAC GACCCTTAAT
GACGGGCAAT TTAGCCTCAA CAACGGCGCA ATCGCTCAAA ACACCAAGGT CAATGGCGGG
CAATTTAACG TTAATGAAGG CGCGACCGCC GAGGGTGTGA CGGTAAAAGG CGGTGAATTC
AACCTGCGAG CGCGCGCTCA GGCGATGAAA TTAACCATTG AGCACGGTGA AGCACAGATC
GCCGGCACGC TGACCGATGT GACACTGCGC GGCGGTAATA CCACCCTGGC TAGCACTGCC
GACGTGGCGG GCACCATTCA CTCAATATCA GGGAGTGCGC TTAAGGTTTA TCAAGGCGCA
CATACCGCAC AAGCGGATCT CAATCTGGCG GGGCGAGTGG TGTTATTCGC CGACGACGTT
GCCCCAATGG CAGCACTGCC CTCACGAGCA GTGCGCTCTG CCGATAACCG TTTATCCGCG
CCATTTACCT TTAGAAGAGT CAATATGAGC GGCGGTACAC TGGATTTACG CAATGTGAAA
AATGCACAGT TAGTGATGGA CTCGCTGGCA GGCAACGGCA CCTTCAAACT GGGCTCGATG
CTGCAACAAG ACGCCTCGGC ACCGGTGAAT GTCACGGGTA ACGCGGATGG CGATTTTACC
CTCCAGATAG ACGGTAGCGG CATCGATCCG ACCAACCTTA ATGTCGTTAG TACCGGCGGC
GGTGACGCAC GTTTTACCCT AACCGATGGC CCGATAGGCC TTGGCAACCG CGTGTATAAC
CTGGTTAAAG ATGCGAGTGG CAAGGTCACG CTGGTGGCTA ATGAATCAAC CGTGACACCG
GGTACGGCCA GTATTTTAGC AGTGGCTAAC ACCACACCGG TTATCTTTAA TGCGGAATTA
AGCTCTGTTC AACAGCGTTT GGATAAGCAA AGCACCGAAG CCAATGAAAG CGGCATCTGG
GGTACCTACC TGCACAATAA CTTTGCAGTA AAAGGCCGCG CCGCTAACTT CGATCAAACG
TTAAACGGCA TAACGTTGGG GGGCGATAAA GCCACCGCCC TGGCAGACGG CGTATTGAGT
GTGGGGGGGT TCGCCAGCGC GAGTACATCA AGTATTAAGA CCGACTATCA AAGCAAGGGG
AATGTCGATA GCCACTCATT TGGGGCCTAC GCGCAATATC TTGCCAACAA CGGTTACTAT
GTGAATGGCG TGGTGAAAGC CAATAAATTC AATCAGGATA TTCATGTTAC CAGCGCCGAT
AACAGCGCCA GCGGCAACAC TAATTTCTCG GGTATGGGGG TGGCAGTGAA AGCCGGTAAG
CATATCAACC ATAATCATCT GTATGTTTCG CCATACGTGG CAATGAGCGC CTTTAGCTCG
GGTAAAAGTG CGGTCAAACT GTCTAACGGC ATGGCGGCGC AAAGCAGCAG CACCCGCTCG
ATGATAGGCA CCCTTGGGGT GAATGCGGGT TACCGCTTCG TGCTGAAAAA TGGCGTAGAA
ATGAAGCCTT ATGTCAGCGC CTCGGTTGAT CACGAATTTG CTGCCAATAA TAAATTCAGA
GTGAACCAGG AGATGTTCGA TAACAACCTG AACGGCACTC GTATCAGCAC CGGTGCAGGC
CTGAACGTCA ACATCACCCC TAACCTGTCT GTCGGTTCTG AAGTAAAGTT GTCCAACGGA
AAAAACATCA AAACACCAGT GACCTTTAAT CTGAACGTGG GTTATCGCTT CTAA
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| Protein sequence | MKSRSNLNTR LLPLSILISS LISGAVLAAP SVAIPPSVQD LINQVQSYAN AHVISPEQAE
TLIKRLTVTP EKLKEEEARV KQELAAVEKK QTEAKKEIIT TSIEKDQFNK ALNNTQKAKL
AAETVFINAN SKQNEAIKAV NKNWSLADEN ISTKLSVIVN GESKTQAILT EKIKLTEIAN
INQQEQIIKA QQLDADIQQI KSALADAESN GTTGTLVLRQ KLAQAEEKLE IAKNNPKSKL
FDAKAAHDRT SKNLEGPEGL AKRAAIQNKK VYEQELKVLQ DPIDAAEEQL NTAQENTFAL
MDKQSALAGQ KINSIALTNS LQEVFKQAKN AQLQAEQAAQ QAKDATTAQQ AMAEAAAAEK
LLQEVEQKIT TIAVIAQEAE AKLTAAQRAK ADAELQLADK MEQLANINLD LTALNNLDPK
VISQQTLAKG EAQPVADGEL AMAIKVAGGE QNVTTGGVVL ASVVTEDGVV NLSDNALAHD
SQLINGTLNN TRAHDVNTQV GAQGKLLING TQEAAATSEG ATVAAGGSVT AGTNALVTKM
VSAGTVTGND GALFTETTLN DGQFSLNNGA IAQNTKVNGG QFNVNEGATA EGVTVKGGEF
NLRARAQAMK LTIEHGEAQI AGTLTDVTLR GGNTTLASTA DVAGTIHSIS GSALKVYQGA
HTAQADLNLA GRVVLFADDV APMAALPSRA VRSADNRLSA PFTFRRVNMS GGTLDLRNVK
NAQLVMDSLA GNGTFKLGSM LQQDASAPVN VTGNADGDFT LQIDGSGIDP TNLNVVSTGG
GDARFTLTDG PIGLGNRVYN LVKDASGKVT LVANESTVTP GTASILAVAN TTPVIFNAEL
SSVQQRLDKQ STEANESGIW GTYLHNNFAV KGRAANFDQT LNGITLGGDK ATALADGVLS
VGGFASASTS SIKTDYQSKG NVDSHSFGAY AQYLANNGYY VNGVVKANKF NQDIHVTSAD
NSASGNTNFS GMGVAVKAGK HINHNHLYVS PYVAMSAFSS GKSAVKLSNG MAAQSSSTRS
MIGTLGVNAG YRFVLKNGVE MKPYVSASVD HEFAANNKFR VNQEMFDNNL NGTRISTGAG
LNVNITPNLS VGSEVKLSNG KNIKTPVTFN LNVGYRF
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