Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1113 |
Symbol | cpdP |
ID | 5387703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 1315145 |
End bp | 1316182 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640864089 |
Product | 3',5'-cyclic-nucleotide phosphodiesterase |
Protein accession | YP_001400094 |
Protein GI | 153950582 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5212] Low-affinity cAMP phosphodiesterase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.000266448 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTATTGA AATATCTCTC GATTAAATCT GCATCAGATA AGATAAAGAG TGGTCTGCTA AAGACGGGCG TGATTTTATC TTTCAGTCTC TTCAGTTCAC TGTCCACTGC GGCTTTTGAG GTCGTGGCGC TTGGCGTTGA TGGGGGTGTC AGTGATGGTA ATCTGACCTC TTATCTGATT CGCAATGATA GCCAGCCGCT GTATTTGGGG CTGGATGCCG GTTCCGTGTT GCCAGGGATC GCTCGTGCCT TGGAGAAAGG CCATTTTGCA GCGATCACCG ATGCCATGGC CGCTCCGCTA ACCCGGCAGG GCTATATTTT TCGCCAGAGC ATTAACAGTT ATTTTATTAG CCATGCGCAT TTAGATCATG TCTCTGGCCT GATTATCGGT TCACCGGATG ACAGCAAGAA AACCATTTAT GCTTCGGCTG ATACCATTGA TGTGCTGAGA AACTACTATT TTAACTGGCG CGTTTGGCCC AATTTTACTG ACAGCGGCAG TGGGACTCGT TTAGGGACCT ACCGTATGCA GGTGGTGCGC CCTGCTCAGT CTTTGAGCTT GGGGTTGACC CGCTTAACGG GGGAAATGTA TCCACTGAGT CATGATAAAT CGCCCTCATC CATGCTGCTT ATCAGTAGTA ATAATGAGTT CTTTGCCTAT TTCGGTGATA CCGGCCCGGA TGATGTCGAA AAATCCAAAA ATCTGGATAC GGTCTGGCGC AAACTGGCGG AGAAGGTTAC ACAACAACAA CTGAAAGGGA TGATTATTGA GGTCTCGTAT CCTAATGATG TGGCAGACAA TAAGTTGTTT GGCCACATGA CACCAACGTG GTTGTTGAAA GAATTGAAAA AACTGGAGCA ATACAGTGGG GAAGGCCAGC CACTAAAAGG ATTACCGGTG GTGATTAGCC ACATAAAACC CTCATTCCAG CAGGGGCAGG ATGTGCGTAA ATTAATTCTC TCTGAGTTGC AACAAGGCAA TGATATGGGA ATCGAATTTA TCCTGATGGA ACAAGGTGAT AGCCAGAAAT TCCAGTGA
|
Protein sequence | MLLKYLSIKS ASDKIKSGLL KTGVILSFSL FSSLSTAAFE VVALGVDGGV SDGNLTSYLI RNDSQPLYLG LDAGSVLPGI ARALEKGHFA AITDAMAAPL TRQGYIFRQS INSYFISHAH LDHVSGLIIG SPDDSKKTIY ASADTIDVLR NYYFNWRVWP NFTDSGSGTR LGTYRMQVVR PAQSLSLGLT RLTGEMYPLS HDKSPSSMLL ISSNNEFFAY FGDTGPDDVE KSKNLDTVWR KLAEKVTQQQ LKGMIIEVSY PNDVADNKLF GHMTPTWLLK ELKKLEQYSG EGQPLKGLPV VISHIKPSFQ QGQDVRKLIL SELQQGNDMG IEFILMEQGD SQKFQ
|
| |