Gene YpsIP31758_B0119 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_B0119 
Symbol 
ID5384219 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009705 
Strand+ 
Start bp131682 
End bp132401 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content37% 
IMG OID640857228 
Productputative type IV secretion system protein IcmJ/DotN 
Protein accessionYP_001393417 
Protein GI153930708 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones65 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCACCT CAAGTAAAAA CATTGATCGA CGCCAATGCC AACCCATCAT TGGCGTTAAA 
AGAAAGGTTT GGCGTCAAGA TGATGAACAT GCTGATGAAT TTGATACTGA ATTTCAAGAA 
GTCAGAACCT CAGTACTAAA ACGAGATAAC CATACTTGCA AATTCTGTTT TTTCAAATCA 
TTACACTATC AGGAGGTTCA TCATATTAAT GATGACCACT CCAATAACAG TCCTACCAAT 
TTAGTAACAG TATGTCCTTT ATGTCATCAG GTTCACCATC TCGGTATGGT AGCAATCAAA 
GGTTCTGGTT TTATTTCCTA TATTCCAGAA CTGACTCAAA CAGAAGTGAA TTGGGTTGTC 
AGAACCCTTT TTATGCTACT GCATAATCTA AAAAAAGATG ACCCAGTGAT TAACCAACTC 
CATAGCCTTT ACTCCGTATT TCAAGAAAGG GGAGCGGATA CGTTAAAAAA TGTTTTTTAT 
CATGGAGAGA AATCAGTCAT TAACTTAAGT TCTCCAATCG TTCTGGCCCA ATATCTCTCG 
CTCTGTGACG ATAAGTTATT TGAAGACAGA ATTAACAGTT TAGCGGGTTT AGTTGTCGTC 
CCTACAATTC AAGCGTTTCA GCCAAAACAG CTTGAGGCAT ATTTTCACGC TCAAGGTGCG 
GCAAATAATA AAAAAGAGTC ATACGAAGCA TTATTCAACA ATCTAATTTC AAATCTATAA
 
Protein sequence
MITSSKNIDR RQCQPIIGVK RKVWRQDDEH ADEFDTEFQE VRTSVLKRDN HTCKFCFFKS 
LHYQEVHHIN DDHSNNSPTN LVTVCPLCHQ VHHLGMVAIK GSGFISYIPE LTQTEVNWVV 
RTLFMLLHNL KKDDPVINQL HSLYSVFQER GADTLKNVFY HGEKSVINLS SPIVLAQYLS 
LCDDKLFEDR INSLAGLVVV PTIQAFQPKQ LEAYFHAQGA ANNKKESYEA LFNNLISNL