| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_B0111 |
|---|
| Symbol | |
|---|
| ID | 5384186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009705 |
|---|
| Strand | - |
|---|
| Start bp | 122942 |
|---|
| End bp | 123790 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640857220 |
|---|
| Product | putative type IV secretion system protein DotC |
|---|
| Protein accession | YP_001393409 |
|---|
| Protein GI | 153930710 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 0.200917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGACT TGCCTCCTAT GTCATTGCAG CAAGTTCAGA ATATTTTTGA TGATAAATCA
GTAGCTAGAA CACAAGCGGA TTCAGATTCA CAATCATTAG TTGATGATAT CAAATCAAAA
AAGAATCAAG CTGCTTCTGC AAGGACTCAA GCTATTTTCG ACGTTGCTTT GAGTTTAGGT
GTTAAGGCTG GCCTTGCACA TCAATTGAAT AATATTAATA ATTCAATTAA GAAGCATGAA
AGAGATTTGG ATACTGTTTA TGACTTTAGT CATCTGATGA TACAAGATCG TGTTGTACCC
CCTGTTATAT CAGAGGCTCG TGATCTCTAT AATCAAGATG GAGATTTCTC ATTACGTTTA
TCAGGCGCGT TTTACAAAAT TGTGGCTCAA GCTAAATTTT CATCAGTTGC CCCTAGTTGG
CGTGACTACT TAAACTTTCC AGACTCCGGT TTTAATGCTT CATTTCTTAA TACTGCTCTG
ATGCCAAAAA ACTCTGAAGA AAAGAGGATT TGGAGCATGG CTGTTGATGA TGGTTGGAAG
CAAGGTGTTG AACAGGCAAA TTTAATTTTA AAGCAGAATA TGGATCGTAT GAATCGTGAT
TTATCTGGGA TGATTTTATT TCATAAATTT GTTTTGGAAG GAAAAATCAC GATGCCTGTT
ATTGCATCGG CTGATCTTCC CGTTAACCTT GATGTCAATG CTATGTCCGT AGATGAGACT
TTGTTACGGA TAACCTCTTT GCCAGAATTT AATAGCAAAA TATCAACTTG GAAATCAACG
GTTTCATCTC AGCCACTTAA ATACAAAAAT GCAGCTACGA TACGTAGTAC CCTTAATAAG
GATATGTAA
|
|---|
| Protein sequence | MSDLPPMSLQ QVQNIFDDKS VARTQADSDS QSLVDDIKSK KNQAASARTQ AIFDVALSLG
VKAGLAHQLN NINNSIKKHE RDLDTVYDFS HLMIQDRVVP PVISEARDLY NQDGDFSLRL
SGAFYKIVAQ AKFSSVAPSW RDYLNFPDSG FNASFLNTAL MPKNSEEKRI WSMAVDDGWK
QGVEQANLIL KQNMDRMNRD LSGMILFHKF VLEGKITMPV IASADLPVNL DVNAMSVDET
LLRITSLPEF NSKISTWKST VSSQPLKYKN AATIRSTLNK DM
|
|---|
| |