| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oant_1688 |
|---|
| Symbol | |
|---|
| ID | 5378672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ochrobactrum anthropi ATCC 49188 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009667 |
|---|
| Strand | + |
|---|
| Start bp | 1774648 |
|---|
| End bp | 1776663 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640834347 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_001370233 |
|---|
| Protein GI | 153009018 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.585859 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACGA AGGTTAAGGA AAACGAAGAA GCCGAAGTCG AGCGCGAAGG TGCTGCCGAC
GGTCCGCTTC TCGACCTTTC TGACGATGCT GTCAAGAAGA TGATCAAACT CGCGAAGAAG
CGCGGCTACG TCACCATGGA CGAGCTGAAC GCCGTGCTGC CTTCCGAGGA AGTGACATCC
GAGCAGATCG AAGACACGAT GTCGATGCTT TCCGATATGG GCATCAACGT CGTTGAAGAT
GACGAGCAGG ACAACGACCG CGAAGAAAAC AACGACGACG ACTCGGAAGA GGGCGGCGAT
CTGGTCGAAT CCGGCGGTAC GGCTGTTGCC ACCACCACGA CCAAGAAAGA GCCGACCGAC
CGTACCGACG ATCCGGTGCG CATGTATCTG CGCGAAATGG GGTCCGTCGA GCTTCTGTCG
CGCGAAGGCG AAATCGCGAT TGCAAAGCGC ATCGAGGCTG GTCGCGAGAC CATGATCGCC
GGGCTTTGCG AAAGCCCGCT GACCTTCCAG GCGATCATCA TCTGGCGTGA CCAGCTGAAC
GATTCCAACA TTCTGCTGCG CGAAATTATC GACCTCGAAA CCACCTATGC CGGTCCGGAA
GCCAAGCAGG CTCCGGTGAT CGAGCGCGTG GAAGAGGAAA AGCCGCGTGA CGACAAGCCT
CAGCGCCGCC GTGACGACGA CGACATTACC AATGTCGGCG GCGACATGCC CACGGAAGAA
GAGGAAGAGG ACGAAGACGA AGCCAACCTG TCGCTGGCGG CCATGGAAGC CGAACTGCGT
CCGCAGGTCA TGGAAACGCT CGACCTCATC GCCGATACCT ACAAGAAGCT GCGCAAGCTG
CAGGATCAGC AGGTCGAGGG CCGTCTGGCC GCGACGGGCG AACTGTCGTC GAGCCAGGAA
CGTCGCTACA AGGAACTGAA GGATCAGCTC ATCAAGGCAG TGAAGTCGCT GTCGCTGAAC
CAGAACCGTA TCGAACAGCT CGTCGAACAG CTTTACGACA TCAACAAGCG TCTGGTTCAG
AACGAAGGTA AGCTGCTGCG TCTGGCCGAA TCCTTCGGTG TGCGTCGTGA GGAATTCCTG
AAGGAGTATC AGGGCCACGA GCTGGACCCG AAATGGGTAG AGCGCGTGAG CACGCTTTCA
GCCCGTGGCT GGAAGGAATT TGCAGCCAAG GAAGAGCGTG CCATCGACCG TCTGCGTTCT
GAAATCCAGA TGCTGGCGAC CGAAACCGCG ATTTCCATCG GTGAATTCCG CCGCATCGTC
AATCAGGTGC AGAAGGGCGA ACGCGAAGCA ACTATCGCCA AGAAGGAAAT GGTGGAAGCC
AACCTTCGTC TCGTCATCTC GATTGCCAAG AAGTACACGA ACCGTGGCTT GCAGTTCCTT
GATCTCATTC AAGAAGGCAA TATCGGTCTG ATGAAGGCGG TCGACAAGTT CGAATATCGT
CGTGGTTACA AGTTCTCGAC CTATGCGACT TGGTGGATTC GTCAGGCAAT CACCCGTTCG
ATTGCCGATC AGGCGCGCAC CATCCGTATT CCGGTGCACA TGATCGAAAC GATCAACAAG
ATCGTCCGCA CGTCGCGCCA GATGCTGCAT GAAATCGGTC GTGAGCCGAC GCCGGAAGAA
CTGGCTGAAA AGCTCGCCAT GCCGCTCGAA AAAGTGCGCA AGGTGCTGAA GATCGCCAAG
GAGCCGATCT CGCTCGAGAC GCCGGTTGGC GACGAGGAAG ATTCACATCT GGGCGATTTC
ATCGAGGACA AGAACGCGCT TCTGCCAATC GATGCAGCGA TTCAGGCCAA TCTGCGCGAT
ACGACGACCC GTGTTCTGGC TTCGCTGACG CCGCGTGAAG AACGTGTTCT GCGTATGCGT
TTCGGCATCG GTATGAACAC CGACCACACG CTGGAAGAAG TCGGCCAGCA GTTCTCGGTT
ACCCGCGAAC GTATCCGTCA GATCGAAGCC AAGGCGCTGC GCAAGCTGAA GCATCCGAGC
CGTTCGCGCA AGCTGCGTTC GTTCCTCGAT AGCTAG
|
|---|
| Protein sequence | MATKVKENEE AEVEREGAAD GPLLDLSDDA VKKMIKLAKK RGYVTMDELN AVLPSEEVTS
EQIEDTMSML SDMGINVVED DEQDNDREEN NDDDSEEGGD LVESGGTAVA TTTTKKEPTD
RTDDPVRMYL REMGSVELLS REGEIAIAKR IEAGRETMIA GLCESPLTFQ AIIIWRDQLN
DSNILLREII DLETTYAGPE AKQAPVIERV EEEKPRDDKP QRRRDDDDIT NVGGDMPTEE
EEEDEDEANL SLAAMEAELR PQVMETLDLI ADTYKKLRKL QDQQVEGRLA ATGELSSSQE
RRYKELKDQL IKAVKSLSLN QNRIEQLVEQ LYDINKRLVQ NEGKLLRLAE SFGVRREEFL
KEYQGHELDP KWVERVSTLS ARGWKEFAAK EERAIDRLRS EIQMLATETA ISIGEFRRIV
NQVQKGEREA TIAKKEMVEA NLRLVISIAK KYTNRGLQFL DLIQEGNIGL MKAVDKFEYR
RGYKFSTYAT WWIRQAITRS IADQARTIRI PVHMIETINK IVRTSRQMLH EIGREPTPEE
LAEKLAMPLE KVRKVLKIAK EPISLETPVG DEEDSHLGDF IEDKNALLPI DAAIQANLRD
TTTRVLASLT PREERVLRMR FGIGMNTDHT LEEVGQQFSV TRERIRQIEA KALRKLKHPS
RSRKLRSFLD S
|
|---|
| |