Gene Oant_0170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOant_0170 
Symbol 
ID5380788 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOchrobactrum anthropi ATCC 49188 
KingdomBacteria 
Replicon accessionNC_009667 
Strand
Start bp190992 
End bp192533 
Gene Length1542 bp 
Protein Length513 aa 
Translation table11 
GC content55% 
IMG OID640832819 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_001368730 
Protein GI153007515 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTCTGT CGCCCAAGCT CGATTTCCGT CAATCGCAAT CGCTGGTGAT GACCCCCCAG 
CTGATGCAGT CGATCAAGCT GCTGCAGATG ACGCATATGG AGCTGGAGCA ATTTCTCGAC
ATTGAAATCG AAAAAAATCC GCTGCTGGAT CGAATTGAGG CAGCGAATGA TGATTTTTCG
GGCGCTGAAT CAGCACGAGA CGGCGCTGAA ACCGGCGGAG AGGATGCGGC GTCGGATGAC
TTGTCGGATG GCGACTGGTT CAAAACAGGC GCTTCGGATA ATGCCGAAAA TCTCTCATCC
ACCTTCGACA GCTCACTTGA AAATATCTTT CCGGATGATC CGGGTCGCTT CGACGAGATC
GGTCCCGATC TTGCCGCGCA ATGGAAATCG TCCGTCGGTG ACGGATATGT TTCAGGTGGC
AGTTACGACA TCGATCAGGT TACGGCCAGC CGGATTTCAT TGAGCGAGCA CGTGGCGGAA
CAGATCACGC TGACTTTTTC CAAAGCGGCA GACCGGTTCA TTGCGACGGC GCTCGCCGAT
GCACTGGACG AGAGCGGCTA TCTGCGTGTC GATATTGTCG GTCTGGCCCA GAATCTTGGC
GTGGAAACCG TCGAGATCGA GCACGTTCTT GGAGTGATGC AAGACTTTGA TCCGGCAGGC
CTTTTTGCCC GTGATCTGCG GGAGTGTCTG GCGATACAGT TGCGTCTCAA GGATCGGTTC
GATCCGGCCA TGGAGGTGTT GATCGACAAT CTCGATCTTC TTGCACGGCG GGATTTCGCG
ACGCTCAAGA AGCTGTGCGG TGTCGATCAG GCCGATATTC TCGATATGCT GACCGAAATC
CGTATGCTCG ATCCAAAGCC CGGTGCTTTG TTCGAAATCT CCGTGGCCGA TGCCATTGTG
CCGGACGCAC TGGTTACACC GTCGCGTGAC GGTGGCTGGA CTATTGAACT CAACGCAGCC
GCAATGCCAC GTCTTATCGT CAACAATGAA TATTATGCAG AGGTGAGCAC CTCGGTCAAA
GCCGAAGAAA AAGCATTTCT CTCGGATTGC ATGCAGACTG CGAACTGGCT CGTACGCAGT
CTCGACCAGC GCGCGCGCAC CATTCTCAAG GTAACGCAGG AAATCGTCCG GCAGCAGGAC
GGCTTTCTGC GCCACGGCGT GACCCACTTG AAGCCGCTCA ACCTGCGCAC GGTTGCCGAC
GCGGTCGGTA TGCATGAATC GACCATCAGC CGCGTGACGG CGAACAAATT CATGGCCACG
CCGCGTGGCG TGTTTGAACT GCGCTATTTC TTTACGGCCT CCATTGCCTC ATCCGAAGGC
GGCGACGCTC ATTCGTCGGA GAGCGTGCGC CATCGTATTC GGCAGATGAT CGACGCCGAA
AAGTCCGACG ACGTACTGTC TGATGATGCC ATCGTGGATG CTCTGAAGAA GGACGGTGTG
GATATCGCGC GAAGAACGGT CGCAAAATAT CGGGAATCGA TGAATATTGC TTCATCGGTT
CAGCGCAGGC GTGAAAAGAA GGCAAGATTG TCAGCTTCCT GA
 
Protein sequence
MALSPKLDFR QSQSLVMTPQ LMQSIKLLQM THMELEQFLD IEIEKNPLLD RIEAANDDFS 
GAESARDGAE TGGEDAASDD LSDGDWFKTG ASDNAENLSS TFDSSLENIF PDDPGRFDEI
GPDLAAQWKS SVGDGYVSGG SYDIDQVTAS RISLSEHVAE QITLTFSKAA DRFIATALAD
ALDESGYLRV DIVGLAQNLG VETVEIEHVL GVMQDFDPAG LFARDLRECL AIQLRLKDRF
DPAMEVLIDN LDLLARRDFA TLKKLCGVDQ ADILDMLTEI RMLDPKPGAL FEISVADAIV
PDALVTPSRD GGWTIELNAA AMPRLIVNNE YYAEVSTSVK AEEKAFLSDC MQTANWLVRS
LDQRARTILK VTQEIVRQQD GFLRHGVTHL KPLNLRTVAD AVGMHESTIS RVTANKFMAT
PRGVFELRYF FTASIASSEG GDAHSSESVR HRIRQMIDAE KSDDVLSDDA IVDALKKDGV
DIARRTVAKY RESMNIASSV QRRREKKARL SAS