| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4267 |
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| Symbol | |
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| ID | 5373826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 5086231 |
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| End bp | 5090919 |
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| Gene Length | 4689 bp |
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| Protein Length | 1562 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640832531 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001368445 |
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| Protein GI | 153002764 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATCG GTTACAAGAA ACTGTCTTCC GCATTATTTT TGACATTTTT ATCGCCCCTT
ACAAGTGCAG CGTATGCTGC CGACATCAAT CCTGTGATTG CTGAAGCTTT GGAGGAGCCT
GGCTTTGGTC TTACTCAACA GCCTCAGGGT ATTTCAAAAT TTGCTGTTGT ATCAGCGGCA
AATACCGGAG GTTCGGACAC ATCCCCCACA AATACCGCTG AACTTGCCTT AGCAAGGATG
AATATAAAAA CAGAGGTGAC CCCTGAAACA ACTGAGCTTT TCGGTGAAAA GGTTGATTTA
AATTCAGGGG CTATCAGTAT GACAAATACT GATTTAGTAA TTCCTGGTAA TTTTCCTATC
GAAATGGGTA TTACTCGAGT TTATAAAGGA GTCCAATATT CACAGGGGCA ATTATTGCAC
TTTGCGGATT GGCAGTTAGA TATACCGTCA ATTTCTACCA CCATAGTAGA TGGTGATGCT
ACAGTTAATA CTTGGACAAA TGGCAAACCT TGCTCAGGCT CCCTCAATCC AGGTTCAAGT
TACCTTGGCG ATGGTATGGG CTATATTGTC GCGAAACAAT ATTGGAACGG TGACTTTATT
AACGTCCCAA GCGTAGGCTC AGAGCGATTA CTTGAACCTA ATACGGTAAC CCCAGGTGTC
ACGCGGGTTG CTAAAAACTG GCGTATCACC TGTCAGGCTA ATGGCAACTC AGAGGCGTTT
ATTGCCACAT CTCCACAGGG GATTACCTAT ACGTTTAGCA TGTTACGCAC TTTTCCAGCA
GAGATATTAG AAATCCCTTT CGTCGATAAA GAAACGAGTG CTACATGGAC AACTACAACC
CCCGTATTTA AAGCATATAT GCAGGTTACC GAGGTAAAAG ATAGGTTTAA TAATAAAGTA
ACCTATCACT ACAGCGCGCC AGACCAATTG GATTCGATTA CCTCTTCCGA TGGCAGGTCT
ATTCATTTTA CTTATGAACC TGGTGTAGAA CGAAAGCGTA TTAAGTCTAT TACAAGTGAT
GGAAAAACCT GGTCGTACTA TTATCGAATC GCAACTGAGA AAAAGGTTAT TGGAGGTATT
AGTATTTATC CAGACCAACT TTATCGTGTT GTTTTACCTG ATGGACGTGA ATGGGTATAT
GATATTGACT TTGCACCGAC TAATGCCTTA GAGCAGCGCC ATATTCAATA CAGTCTAGGC
GACTCCCAAC AAGATGACAT GCAGTGCACA TTTTCTGAGA TGAATCCTAA TTATGTGCCT
CGATCTTATG TTAGTCGAGT GACTCATCCT AATGGATTGA AAGCTGAGTT TGAGGTTCGG
TCAACACTGT TTGGACGCTC ACAAGTACCT AAGCAATTTG AACGGCTACC TAATATTAGG
ATCAACGTTC ACAATAGATG TTTTTCAAAC TTTGCGCTGA TTAGAAAAAC GTTATCAGGG
AAAGGCGTTT CTCCACTGCA TTGGTATTAC AGTTACTCAC AAAACCCAGG GCAATACGTA
GATGGAAGTG GCGATTATGG ACCTGCACCA CAGGCATTAT CGGGTCTACC AGAACTACCA
AGTGGCATGT CAGCAATGGA TTTACGTTCA ACCACTGTGG TTGCTCCTGA TGGTAGTAAA
GCAATCCATG TGTTTGACCG TCGTTATAAC TATTCGCAAG ATAAGGAGGT TGCGACCTAC
TTGTACGATA CTGACGGTAC GACATTATTG CAGCGCAGCG AGATGACCTA TGGCCAAGGG
AGTGCGATAG GTAAATCGCA GTTATTTAGC GGTAAATGGG ACGGAAAAAT TTTTTTAGGC
AGCGCCGCTT CATTTGAAAA TGAGTCGCAG TACAATAGCT TTGTCAATAA TATAAAAAGT
ACTATCTATC AACATACGCA AGACTCAAGA GTTGATGCTT ATACTAAAGA GTTTTTAAAC
TTCAATAACT ACGGCTCACC CGAGTTAACG GTAGAGTCCA ATGGTTTTAA TGCTAATAGG
AAATACCTAA AAAATACGTA TTATCATGAT TTGAATAATT GGTTAATTAA TCTTGAGGAT
AGCAACGCCA TTTCATTTGA TGGGGTTAAC TATATCACCG CCAAGAAGAA TACCTATTAT
CCTGATAATT CCGCCGAAAA GTCTTCGCTT TACCAAGAGT ATCAAAATGG CAGATTGCTC
AGCACGCACA GTTACTATGG TGATGGCAAC ATAAAGCAAA CTACGTTCAA TGCAAACAAT
CGTTGGATGG CATTTGCCAA TTATATGCGT GGCAAGCCGC AGTTAATCAA AATCCCTCAA
CGTGACACTG CTAATTGTGC AAACCCAGAT ACCTGTTTTT TGTCGGCATC AATGGTGGTC
GATGGCAGTG GCAATATCAC CAAAGTAACC GACTTTAATG GTGTTGAAAC TCACTATCGT
TATGACAGTA ATAACCGCGT TATCAATGTA AAGAATGCGG ATACGCGATG GGCTGATACA
ACTATTAGCT ACGACTTAGA CAGTAGTGAT AATGCGGCAT TGTTCCAAAA TATTACACGT
GGCAACTACA AAAAGACGGT CACGCTCGAT GGCTTAATGA GGCCTATTTT AGTGAAAGAG
TGGGACTTAA ATAACGAGTC TGCAACCGCT AAATATATTA GCCAAGCATT TAACGTTTAC
GGTAAGCCTA CCTTTACTTC ATTTCCATCG ACCTCACCTG ATGAGACGCT GGGAACCACT
ATCACTTACG ATGGGCTCAT TCGCACCACA TCCACAACTC GCACAAGTGA TAATAGCCAG
ACAACGACGC AATATCTATC AGGCAATCAA ACTGCAGTAA CAGATGGTCG TGGCAATACA
ACGCTAACAA ATTATTTGGC TTATGGCTCG CCATCGAGTG AGAAAGCGAC GCAGATAGCT
GCGCCTGATA CTGATGTCAT TAGTATCAAC TACAATGAAT TAGACCAAAT TGTTGCCATT
ACTCAGGGCT CGATTACGGA AAACCGTTTG TACAATGGCT ATCGCGACCT GTGTAAGGTG
GTGCGTCCTG ATACGGGGAT GGCAGCATTT GGCTATAATA ATGTTGGTGA AATGATATGG
CGAGCAGAGG GGACATCTGG TAGTACGACG TCTTGTGATG AAGCCTCCGT ACCTTCGGCA
CATAGAGTGG TGCTTACTTA TGACAACGTC GGTGCACTCA AGACTGAAGA CTTCCCAGAT
TCAACACCTG ACAGACAGTA TACCTATGAC AATAACGGCA ATTTGAAGTC GTTAACAACG
GGAACGGCTT CGTGGCAATA TCAATATAAC AGTCTCAACT TGCCTCAGAG TGAAACTCTC
AGCATTGATG GTCGCAGTTT TGCGTTGACA TCGGGCTACG ATAGCTTAGG TAGTGTTGCC
TCTCTCCAAT ATCCCTCTGG TGCCGTGGTG GACTTTGCGC CTAATGCATT AGGTCAAGCC
ACAAAAGCGG GCACCTATGC TTCAGGAGTC AGTTATTATC CAAATGGACA ACTTAAACAA
TTCACCTATG GTAATGGCAT TGTGCGTAAC GTCGCATTGG ACACCACTGG GCGAATTGAT
GCGCTAACGG ATATCAAAGC TGGCTCGCTG AAGAATAGCC TCGACCCTAG TTATGACAGT
AACGACAATT TAACCCGCTT GATTGATGGT GTTGACTCAA GCAACAACAT ATCTAACCTG
AGTTACGATG GCGTCGATAG GCTGAGGTCT GCCGATGGCA AATGGGGAAC AGGACGTTAC
GTCTATGACG GTCTGGGTAA CATCCTTAGC CGTAGTTTGA ACAATTCCAC TATCAACTAC
CATTACAACA CGCTTAATCG TTTAAATAAC TTAAGTGGTG CCTATGCCTA CAGCTATCAA
TATGATACCG CTGGCAATAT TACTCATAAC GGACGTTATT CACTGAGTTT TAATCGTGCT
CAGCAAATGG TGGCCGCTAA AGACATGGCT TATGTCTATG ATGGCTTTAA TCGCAAAATC
AAACAGAACA AGCCATCAGG TACTGCTTAT ACCGTATATA ACAAAGCCGG ACAGCTACTG
TACCGTGAAG ATGATAATGG TAAAAAGACA GACAGCGTTT ACCTTGGTAA GCAGATAGTG
GCTGAAGTGG ATATTTGCCC GCCATCAGGA TGCGCAGTCA CTCAACCAGC AACGAAGACT
TGCCCTGTGG GATACAGCTT AAACACGGCA GGAACGCTTT GTGAGAAAGC AGAAACACAG
GCGGCCAGCA TTAGCAGTTA TAGCTACAGT TGCCCAACGG GTTACACCCT GTCGGGGTCG
ACTTGCCAGA AGACGGAATC CAAAACGGCT AACAGTACAA CTCAATTGAG TTGCCCTAGA
GGCGGTTCGC TCAATTCAGC GACCTCGATG TGTTCTCGCT TTTTTAGTCA AACATCAAGT
AAGCCACCTA CTGGTACAGG ATTATCTTGT ACGGGGGGTG AACCAATGGG TGGGGGAATG
CGTTTATGGG AGTGCACTGA AACCTATGCC GCCACGCCGA AATCTGTGTA TTCCTGTGAT
GCAGGTTGGA CGCTAAGTGG TACTAGCTGT ACTCGCACGT TATCACAAAA TGCGACCAGT
ACCCCTGTGT ATGCCTGTGT TTCAGGTTGG ACTCTGAGCG GCTCTCAATG TAGCCGATTG
GCAACCACCG CTATCGTTTA CACTTGCCCA TCTGGCTGGA CGCTGAGTGG TAGCCAATGT
ACTCAATAA
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| Protein sequence | MDIGYKKLSS ALFLTFLSPL TSAAYAADIN PVIAEALEEP GFGLTQQPQG ISKFAVVSAA
NTGGSDTSPT NTAELALARM NIKTEVTPET TELFGEKVDL NSGAISMTNT DLVIPGNFPI
EMGITRVYKG VQYSQGQLLH FADWQLDIPS ISTTIVDGDA TVNTWTNGKP CSGSLNPGSS
YLGDGMGYIV AKQYWNGDFI NVPSVGSERL LEPNTVTPGV TRVAKNWRIT CQANGNSEAF
IATSPQGITY TFSMLRTFPA EILEIPFVDK ETSATWTTTT PVFKAYMQVT EVKDRFNNKV
TYHYSAPDQL DSITSSDGRS IHFTYEPGVE RKRIKSITSD GKTWSYYYRI ATEKKVIGGI
SIYPDQLYRV VLPDGREWVY DIDFAPTNAL EQRHIQYSLG DSQQDDMQCT FSEMNPNYVP
RSYVSRVTHP NGLKAEFEVR STLFGRSQVP KQFERLPNIR INVHNRCFSN FALIRKTLSG
KGVSPLHWYY SYSQNPGQYV DGSGDYGPAP QALSGLPELP SGMSAMDLRS TTVVAPDGSK
AIHVFDRRYN YSQDKEVATY LYDTDGTTLL QRSEMTYGQG SAIGKSQLFS GKWDGKIFLG
SAASFENESQ YNSFVNNIKS TIYQHTQDSR VDAYTKEFLN FNNYGSPELT VESNGFNANR
KYLKNTYYHD LNNWLINLED SNAISFDGVN YITAKKNTYY PDNSAEKSSL YQEYQNGRLL
STHSYYGDGN IKQTTFNANN RWMAFANYMR GKPQLIKIPQ RDTANCANPD TCFLSASMVV
DGSGNITKVT DFNGVETHYR YDSNNRVINV KNADTRWADT TISYDLDSSD NAALFQNITR
GNYKKTVTLD GLMRPILVKE WDLNNESATA KYISQAFNVY GKPTFTSFPS TSPDETLGTT
ITYDGLIRTT STTRTSDNSQ TTTQYLSGNQ TAVTDGRGNT TLTNYLAYGS PSSEKATQIA
APDTDVISIN YNELDQIVAI TQGSITENRL YNGYRDLCKV VRPDTGMAAF GYNNVGEMIW
RAEGTSGSTT SCDEASVPSA HRVVLTYDNV GALKTEDFPD STPDRQYTYD NNGNLKSLTT
GTASWQYQYN SLNLPQSETL SIDGRSFALT SGYDSLGSVA SLQYPSGAVV DFAPNALGQA
TKAGTYASGV SYYPNGQLKQ FTYGNGIVRN VALDTTGRID ALTDIKAGSL KNSLDPSYDS
NDNLTRLIDG VDSSNNISNL SYDGVDRLRS ADGKWGTGRY VYDGLGNILS RSLNNSTINY
HYNTLNRLNN LSGAYAYSYQ YDTAGNITHN GRYSLSFNRA QQMVAAKDMA YVYDGFNRKI
KQNKPSGTAY TVYNKAGQLL YREDDNGKKT DSVYLGKQIV AEVDICPPSG CAVTQPATKT
CPVGYSLNTA GTLCEKAETQ AASISSYSYS CPTGYTLSGS TCQKTESKTA NSTTQLSCPR
GGSLNSATSM CSRFFSQTSS KPPTGTGLSC TGGEPMGGGM RLWECTETYA ATPKSVYSCD
AGWTLSGTSC TRTLSQNATS TPVYACVSGW TLSGSQCSRL ATTAIVYTCP SGWTLSGSQC
TQ
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