| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3778 |
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| Symbol | |
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| ID | 5373189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 4488212 |
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| End bp | 4491430 |
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| Gene Length | 3219 bp |
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| Protein Length | 1072 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640832039 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001367965 |
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| Protein GI | 153002284 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCAG CCCATATGCC ACGTATTTTA TTGTTCGTTA TTGCTTTTTT CTCATTTTCC
GTCCTAGCCA ATTCGCCTTT GCAGTTGGAC AAACGTCTTG GCATAAACAA GCAAGATCAG
CAACAAAATC TCAGCATTGA TGAACAAATT AACGACCTAA AAATTAACAT AGAGAAGCTC
GCCGCCAGTG CGACCAGTTT CCAACAGGCG CAAATCGATT TTGAACAACA CAAGAAGCGC
ACCAATCAAG CACTGAAAGA AGCCTACAAA CCTCTCTCTC TGGAAAAAGG CACAGACCTC
AGCCAGCAAG CTTCGATGGC CTATATTCGT TTATCTGAGC TTAAAGAAAG CGAATCGACC
CTTGGCCGAC AAGTAAACGA TTTATTACAG CGCCACAACG ACTTACCCAC AGTGATCGCC
AGCGCGAGGC AGAGTGTCGC CCAAAACAAA AAGGCTGAAC TCGCCCCACT TGATACCCCA
ACGGGTGAGT TACAACAAAC TCAACGACTC TTCTTTGAAC AAAGCCTTGC GACCAATGAG
GCTGAACTCG CCAGCAGCCA AAAACGCATT GAACTGACTC AATTACAATT ACAGCTAGTA
CGGCAACAAC TCGTGCAGCA AGAAGCCTTG ATTGAAACCA TCAACAAGGC GATCAATAAA
CAACGTCAGC AACAAACCGA TGCCACTTTA GCCAAAAACT TAGTCAACAC GGGCAAAGTC
GTCGATCCTA TTACCCGCAA CATTGCCGAC ACTAACCAGA TTTATGGCCA GAAACTGCAA
ACCTTAACCT TGCAGATCAA CAATGTGGTC GAGCAACAAG AGCAGTCGGA AACTCAATAT
CAATCCCAAG CCAAACAGTT GGCGAACATC CAAGAACAGA TCACTTGGGT CAAAATGAAC
TCCGCTTTTG GTGAGCGCTT TTTGCAGATG TTGCAATCGC TACCTAAGCC ACCGAACCAC
GAAAAATTAC AAACCCTGAT CGCCGATGCG CGCTTAGACA GATACCATTT AGAGCAGCAA
CAAGCCCTTA ATGATCAAGA GTTAGAACAG CCCGGCTTAT ACAATGAGCA GCAGATTAAG
CTATTGCACT CGCAGCAAAG TTTGATCTCG CAGTTGATGC AAAGCTATGA CCAATACTTG
AGTGAATTAG GCAAGTTGAA GGTCAACTAT CAACAACTGA GCCAGCAACA TCTTACCCTT
AAAAATACCC TAAACGAGCA TTTATTCTGG GTGCCTAATG CTGCCAGTAT CAGTAAATTA
TGGCTGACCG ACCTTGAGCG CAGCGCGGTT TGGTTAGTAC AGCAAGCGCA GTGGGATGAA
CTGGGTAAAG CGTGGGAAGA GCAAAACGAT TATTGGTCTT GGTGGATCAT ATTGCTGGTA
CTGTGTTTAG TCGTACAGGA CTTAATCACG CCTAAATTCA ATCGCTTGCT AAATCATTAC
ACCACTTATG TGGGCAATGT GACCCAAGAT AAATTCATTT ATACCCTCAA GGCGCTCGCC
TGCAGTGTCA GCTATGCCTT GATAAAACCT TTCCCGGTGA TCATGGCGGG ATTGATTTTT
TATCAATCCG ATCGCAATTT TGTGCAAGCA GTGGGCATGG GCATACTGGC GATTGGTTTA
GTCTACCTCT TGTATCGCTT CATCTTTATT CTGACGCTCG ACAAAGGCGT ACTCGTGGGC
CATTTCAAAC GCCCCTCGAA ACTCATCCAA GCGGGACAAT CAAGGCTCAG GCACTTTGTG
CTGGTCGCCA GTCCATTATT AGGCTTGATG GGCTTTACCG AAGTACTCGA CACCTCACTG
GTGCGCAACA GCATAGGCCG TGGTGCCTTT ATTGTTTTCT GTATCGTTTT ATTCTTGTTA
TACAAAGACA TCTTAATTCT TAGCCGTAAA AACTCGGATG CCAAGAAAGA CGGTAAAAAC
AAAAAACTCA TTCAGAAGAT CCTCTGGACC TTGCTGATAT CTGTGCCTCT TTTAAGTGCA
GGCTTAGCCT TTAGGGGTTA CTACTTCACC GCTTTCCAAA TGCTGTTACA ACTGCAATTG
TCGATCGTAC TTGGTCTGGG TTTCTTGCTG TTATACCAGT TGATCAAACG CTGGATGTTG
ATTGAACGTC GTCGTATCGC CTTCGATCGC GCTAAGGCAA AACGTGCCGA ACGCTTAGCA
CAAAGGGAAA AAGGTGAAAC CCATCATCTC TCCGCCGATG GACTCGATAC CTACGAAGAA
CCCGTGGTCG ATCTGGAAAC CATTTCGAGC CAATCCCTCG GCCTAGTGCG TTCGCTGTTG
TTATTGGCCT TCTTAGCCAG CTTGATTGGT CTGTGGACTC AAACCCACAC GGCGCTGTTT
TCTTTCCTCG ATGGCATTAC GCTGTGGACG ACCAATACCA GCGTTAATGG CCTAGAACAA
CAGTTGCCCA TTACCATGAA GTCCTTGATG TTTGGGCTGA TAGTGGTCGG TTTCTCGCTG
ATGATTGCTA CCAATCTCCC CGGCCTACTT GAGCTAATGA TCCTGCAAAG GCTCGATCTC
TCCCCCGGCA CAGGGTTTGC GATCACAACC GTCAGTCGTT ATCTAGTGGT TTTCCTCGGA
CTATTAATCG GCTTCTCTAA TCTCGGGATG GAATGGTCTA AGTTGCAATG GCTGATTGCC
GCACTGTCGC TCGGTTTAGG TTTTGGTTTA CAAGAGATTT TCGCCAACTT TATTTCGGGT
CTGATCATTT TGTTTGAAAA GCCAGTACGA ATTGGCGACA CAGTGACAAT TCGCGATTTA
ACGGGCACTG TGAGTAAAAT TCAAATTCGG GCGACAACGA TTATCGATTG GGATAGAAAG
GAAATCATCA TCCCGAACAA GGCCTTTATC ACAGAGCAGT TGATCAACTG GTCTTTGTCA
GATCCTATTA CGCGGGTCAT TGTTTATGTG TCGGTGGCGC GGGATTCTGA TCCAGCCAAA
GTCGAAGCGA CGCTGTACCA AGCGGTGCAA GAGTGTGAAG ATGCACTTGC CAGCCCAGAA
CCTGAAGTCT GGTTTGCCGG CTTTGGTAAA CACACCCAAG ATTATGAAGT GCGCGCCTAT
GCAAAAGATA TGTCGGCACG TTGGCCACTG CGCCATGATT TACATAAACG AGTGACTAAA
AAACTCAAAG AAAACAATCT CGAACTCGCC TATCCGCAGA TGGAAATCCA TATTAAGAAT
GGTCAAAGTC GAGAGCAACA AGGCATAATT AGAAGCTAA
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| Protein sequence | MSSAHMPRIL LFVIAFFSFS VLANSPLQLD KRLGINKQDQ QQNLSIDEQI NDLKINIEKL
AASATSFQQA QIDFEQHKKR TNQALKEAYK PLSLEKGTDL SQQASMAYIR LSELKESEST
LGRQVNDLLQ RHNDLPTVIA SARQSVAQNK KAELAPLDTP TGELQQTQRL FFEQSLATNE
AELASSQKRI ELTQLQLQLV RQQLVQQEAL IETINKAINK QRQQQTDATL AKNLVNTGKV
VDPITRNIAD TNQIYGQKLQ TLTLQINNVV EQQEQSETQY QSQAKQLANI QEQITWVKMN
SAFGERFLQM LQSLPKPPNH EKLQTLIADA RLDRYHLEQQ QALNDQELEQ PGLYNEQQIK
LLHSQQSLIS QLMQSYDQYL SELGKLKVNY QQLSQQHLTL KNTLNEHLFW VPNAASISKL
WLTDLERSAV WLVQQAQWDE LGKAWEEQND YWSWWIILLV LCLVVQDLIT PKFNRLLNHY
TTYVGNVTQD KFIYTLKALA CSVSYALIKP FPVIMAGLIF YQSDRNFVQA VGMGILAIGL
VYLLYRFIFI LTLDKGVLVG HFKRPSKLIQ AGQSRLRHFV LVASPLLGLM GFTEVLDTSL
VRNSIGRGAF IVFCIVLFLL YKDILILSRK NSDAKKDGKN KKLIQKILWT LLISVPLLSA
GLAFRGYYFT AFQMLLQLQL SIVLGLGFLL LYQLIKRWML IERRRIAFDR AKAKRAERLA
QREKGETHHL SADGLDTYEE PVVDLETISS QSLGLVRSLL LLAFLASLIG LWTQTHTALF
SFLDGITLWT TNTSVNGLEQ QLPITMKSLM FGLIVVGFSL MIATNLPGLL ELMILQRLDL
SPGTGFAITT VSRYLVVFLG LLIGFSNLGM EWSKLQWLIA ALSLGLGFGL QEIFANFISG
LIILFEKPVR IGDTVTIRDL TGTVSKIQIR ATTIIDWDRK EIIIPNKAFI TEQLINWSLS
DPITRVIVYV SVARDSDPAK VEATLYQAVQ ECEDALASPE PEVWFAGFGK HTQDYEVRAY
AKDMSARWPL RHDLHKRVTK KLKENNLELA YPQMEIHIKN GQSREQQGII RS
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