| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3426 |
|---|
| Symbol | |
|---|
| ID | 5371793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 4068669 |
|---|
| End bp | 4069568 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640831686 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001367616 |
|---|
| Protein GI | 153001935 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTA ATTATTCCTT AGACGATATG CGCTTATTTT GGGTGGTGGC ACAACAAGGG
AGCTTTAAGC TCGCGGCGCA ACACTTAGGC ATTCCACCTT CAACCTTAAG TCGTCGAATC
AATCTGTTAG AACAATCATT AGGATTACGT TTACTGCACA GAGACGCCCA TAGAGTCAAC
CTTACCGCTA CAGGTCAGCG TTATCTCGAA CGCTGCGGCC CGCTGTTTAT CGAGTTAAAC
CAGGTATCTG GTGAGTTGCA TGCGGACAAA CATCAAGCGG TTGGCAAACT GCGGATCTCG
GCGCCCATTA ACACTACCTA TCGCTGGCTA GGTGAATCAC TCAACGCCTT CCAACGGCAT
TATCCCAATA TCGACATCGA TTTAAGCCTG TCGAACATGA ATATCGATGT CAGTGAAAAC
GCCATCGATA TCGCCTTTCG AGTGGGTGAA CCTAAAGATC CCGATTGGAT TGCAAGGCCG
CTCACCACGA TTAGCTTTGT GCTTTGCGCC AGCACATCGG CAACCCATTG GCATGCACTG
CAAGCCATAG AAGCACTCGA ACAACATCCG GTTATCATCG CAAAGCCCGT AAAAATATGG
CGCTTACAAC ACAATATCAC AGGGCAAGAT TTCGAGTTTG AGCCGAGGGG GAATATCAAG
TTAGCCGTCG ATGATATGGC GATCGCCAGT CAGGCTGTAG TGGCGGGACT CGGTATTGGA
CTATTGCCCA TCAGCATGGC GAGTGAACAG ATACAAAGCG GCAAGCTCGT TCAAATACTG
CCAGAATGGC AAGGTATTCC GCGCACCGCC TACTTGATGT ATCGCGATCG GGACAACCTG
CCCTTGCGGG TCAGACTGTT AATTGATTTT ATGTTGGCGA ATCCACCCGA GGCTTATTGA
|
|---|
| Protein sequence | MKLNYSLDDM RLFWVVAQQG SFKLAAQHLG IPPSTLSRRI NLLEQSLGLR LLHRDAHRVN
LTATGQRYLE RCGPLFIELN QVSGELHADK HQAVGKLRIS APINTTYRWL GESLNAFQRH
YPNIDIDLSL SNMNIDVSEN AIDIAFRVGE PKDPDWIARP LTTISFVLCA STSATHWHAL
QAIEALEQHP VIIAKPVKIW RLQHNITGQD FEFEPRGNIK LAVDDMAIAS QAVVAGLGIG
LLPISMASEQ IQSGKLVQIL PEWQGIPRTA YLMYRDRDNL PLRVRLLIDF MLANPPEAY
|
|---|
| |