Gene Shew185_3297 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_3297 
Symbol 
ID5372206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand- 
Start bp3928167 
End bp3928847 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content46% 
IMG OID640831549 
ProductPepSY-associated TM helix domain-containing protein 
Protein accessionYP_001367487 
Protein GI153001806 
COG category[S] Function unknown 
COG ID[COG3295] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0897886 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCTCA TTTCAGTCTT AGGCTGCATA GGGAAAGCCG ATTCTGGAGG CATTTCTCTT 
CGGGTTGCTT TTGAGAGTGC ACCATTGAAA TTAAGAGTCA GTAAGTCGTC TTTGTCCTTT 
GCTCGAATTA TCCATGTATA TGTGTCTATG GCGTTGTTGT TGCTGATGTT GTTTTTTGCG 
GTGACAGGCA TAACGTTAAA TCACCCTAAT TGGTTTTCTC AAGCGGATCA GGAACCTAAA 
CGGGAACAAG TGCCCATCCC TGCCAATTTA TTACCCGTCG ATACACAAGA TGCACAGTGG 
CGTTTGGCAA CGGGCCATTG GCTGAAAAGT GAATGGGCGA TGGATATGGC CACTGCTGAC 
ATAGATGAAG ACGAAATTAG CTTAGTCAGC AAAGGGCCCG GCACTTACCG CAGCCTGACG 
TTGGACTTAC TCGACGGCCA AGCCTATGTC GAAACCTTAG AGTACGGTGT CGTAGCCGTA 
GTGAATGATT TGCATAAGGG CCGTAACACA GGCACAGCAT GGGCTTGGAT ACTCGATCTT 
AGCGCCGTAC TGATTATTTT ATTTTCGCTT ACTGGGGCTT ACTTATTATT GCCTCAAACC 
AAGCGCCTCA AAAAGTCATT GTTATACATG GTACTTGTCA GCGGTAGTTG CGGACTTGTG 
TATGTTTATT TCGTTCCATA A
 
Protein sequence
MQLISVLGCI GKADSGGISL RVAFESAPLK LRVSKSSLSF ARIIHVYVSM ALLLLMLFFA 
VTGITLNHPN WFSQADQEPK REQVPIPANL LPVDTQDAQW RLATGHWLKS EWAMDMATAD 
IDEDEISLVS KGPGTYRSLT LDLLDGQAYV ETLEYGVVAV VNDLHKGRNT GTAWAWILDL 
SAVLIILFSL TGAYLLLPQT KRLKKSLLYM VLVSGSCGLV YVYFVP