| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1829 |
|---|
| Symbol | |
|---|
| ID | 5372349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2193948 |
|---|
| End bp | 2196266 |
|---|
| Gene Length | 2319 bp |
|---|
| Protein Length | 772 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640830032 |
|---|
| Product | vault protein inter-alpha-trypsin subunit |
|---|
| Protein accession | YP_001366035 |
|---|
| Protein GI | 153000354 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0709098 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCACAG GGAAAAGGGT AAAAGAAATC AGCGAAAGCT TAGCGATATT AATGATCAGT
GCCGCCGTAT GTTGGGGCTT GCCCTTTGTG GCATTAGCCT CACCCAATAG CACGGGCACA
TTGTCTGAGC CGCAGAATAT TGCCTCGGCG CTGGTCGGCC AAAATACTGC TCAAAGTACG
GCAGAATCAC AGGTCATTAA TTACGATGAC ATTACTCAGG GATTATTACT TTATCGTCAG
CCGAGCGGCG CTTGGGTGCC ATCTTTGCCA CTCGATACAC AAGTGTCGAT GCAAGTCTCT
GGCTTAAGTA ATCGCGTGAG CGTGAAGCAG GTTTTTCGCA ATAACACTGA GTTTGTGTTG
AATGGGCAAT ATCTGTTCCC GCTGCCCAAT GAGGCCGCGG TGGATTCGCT GCGATTACAC
ATTGGCCAAA GGGTTATCGA AGGGCAAATT CATCCTAAGG CCGAGGCTAA GCAGATTTTT
GAGCAAGCCA AAGCGGAGGG TAAACGCGCC AGCTTAGTGA GCCAAGAGCG GCCAAATATG
TTCACGACCG AAGTGGCCAA CCTAGCACCG CAGGAAGAGT TGATTGTCGA AATCAGCTAT
CAGGAGAGTA TCAAATATGA AGATGGCTTG TTTAGCCTAC GTTTTCCGCT GGTGGTCGCG
CCTCGGTATA TCCCGGGCTT AACCTCTGAC GCCAGTGCTA GCGATTCAAA TAATCCTATA
GCACAGAGCA GCCAATCGAG CCGAGTGACC AGCTCGCAGG TGTTTGATGC CGACCTGATT
GTGGCGCCTG TGCGGGACGG CGCCAGTGGA CGCGATCCTG TGCTCAAAGC GGACATTCAA
GTTTTGCTGG CAAAGGGGGT TGATAAGGCG TCAATTGAGA GCCCTTACCA TGACATCAAA
CTCAAGCAAA CCAATAGCGG CGCCGTTGAT GTGTCACTGG CACAACGCGT GCCTGCCAAT
CGTGACTTTG TACTGCAATG GCGCGTACAG CAGGGTACGA GTCCAATGGC TTGGGTGTTT
AATCAACAGG GTAAGACCCA TAAACCCGAT GGCGATAATT TGTCTCAGGA CACGCTTGAA
ACCAGCAAAG CTAACGGCAT GAATGAAGAT AATTACAGCC TAGTCATGGT GTTGCCTCCT
AAGGTCGAAA AGAGCACCCA ACCGAGTTTG CCCCGTGAAT TAATTTTGGT GATTGATACT
TCGGGCTCTA TGGCGGGGGA TTCTATCGTT CAAGCCAAAA ATGCACTGCT TTACGCATTA
AAAGGACTCA AGCCCGAGGA CAGTTTTAAC ATTATCGAAT TTAATTCCAG TCTGTCTCTG
CTTTCAGCGA CACCATTACC GGCGACCTCG TCGAATTTGT CCCGTGCCCG TCAATTTGTG
AGCCGTTTAC AAGCCGATGG TGGCACCGAA ATGGCGCTGG CACTGGATGC TGCCTTGCCA
AAATCTTTGG GTAGTGTCTC GCCCGATGCC GTGCAACCTT TGCGCCAAGT GATCTTTATG
ACCGACGGCT CTGTGGGCAA TGAGCAAGCC TTGTTTGATT TGATCCGCTA CCAAATCGGT
GAGAGCCGCT TGTTTACTGT CGGCATAGGC TCGGCGCCTA ATTCTCACTT TATGCAAAGG
GCGGCAGAGC TGGGTCGTGG CACTTTTACT TATATTGGCA AAGTGGATGA AGTCGACGCG
AAGATCAGCG CCTTGCTGAG CAAAATTCAA TATCCCGTAT TAACCGATAT TCAAGTGCGT
TATGACGATG GCAGTGTGCC CGATTACTGG CCGTCACCGA TTGCAGATTT GTACCGCGGC
GAGCCTGTGC TTGTGAGTCT AAAACGCAGC GCCCGTGAGC CGCAGGAATT AGTGATCTCA
GGTCGCCAAG GGCATAAAAA CTGGCAACAG TCGTTATCGC TTCAGGACAA CTCAGCGGGA
CTTATCACTA ATCAAGGTGC GGGTTTAGAT TTACTCTGGG CGCGTAAACA GATTGGTGCA
TTGGAGCTGA GTAAAAATGG TGCGAATGAT GACAAGGTTA AGCAGCAAGT CACGGCCTTG
TCGATGAATT ATCACTTAGT CAGCGCTTAT ACCAGCTTAG TGGCGGTGGA CTTAACCCCC
ATAGATTCAA CCGCAATGAA CCGCGATGCC GTGGTGCGTC AGCACTTGCC CTTAGGTTGG
CAGCCTTTTG GTGCCTTGCC ACAAACTGCG ACCTCGAGCC GTTTGGATAT GTTACTGGGT
GCGCTGACCT TGCTGCTGGC CTTGGTGCTT ATGGGATCGA TTCTGCGACA AAAACGCGAA
GAGAAGGCAG CCATGGCGGC GCTTGCCGGT CATCGATGA
|
|---|
| Protein sequence | MITGKRVKEI SESLAILMIS AAVCWGLPFV ALASPNSTGT LSEPQNIASA LVGQNTAQST
AESQVINYDD ITQGLLLYRQ PSGAWVPSLP LDTQVSMQVS GLSNRVSVKQ VFRNNTEFVL
NGQYLFPLPN EAAVDSLRLH IGQRVIEGQI HPKAEAKQIF EQAKAEGKRA SLVSQERPNM
FTTEVANLAP QEELIVEISY QESIKYEDGL FSLRFPLVVA PRYIPGLTSD ASASDSNNPI
AQSSQSSRVT SSQVFDADLI VAPVRDGASG RDPVLKADIQ VLLAKGVDKA SIESPYHDIK
LKQTNSGAVD VSLAQRVPAN RDFVLQWRVQ QGTSPMAWVF NQQGKTHKPD GDNLSQDTLE
TSKANGMNED NYSLVMVLPP KVEKSTQPSL PRELILVIDT SGSMAGDSIV QAKNALLYAL
KGLKPEDSFN IIEFNSSLSL LSATPLPATS SNLSRARQFV SRLQADGGTE MALALDAALP
KSLGSVSPDA VQPLRQVIFM TDGSVGNEQA LFDLIRYQIG ESRLFTVGIG SAPNSHFMQR
AAELGRGTFT YIGKVDEVDA KISALLSKIQ YPVLTDIQVR YDDGSVPDYW PSPIADLYRG
EPVLVSLKRS AREPQELVIS GRQGHKNWQQ SLSLQDNSAG LITNQGAGLD LLWARKQIGA
LELSKNGAND DKVKQQVTAL SMNYHLVSAY TSLVAVDLTP IDSTAMNRDA VVRQHLPLGW
QPFGALPQTA TSSRLDMLLG ALTLLLALVL MGSILRQKRE EKAAMAALAG HR
|
|---|
| |