Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_0411 |
Symbol | |
ID | 5373768 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 468638 |
End bp | 470524 |
Gene Length | 1887 bp |
Protein Length | 628 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640828617 |
Product | diguanylate cyclase |
Protein accession | YP_001364643 |
Protein GI | 152998962 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTAAAC GAAACTCGTC ACTCATACTC TTGCTGTGGC TATGGATGTG TTCAACACCT TCATTCGCAA CCCTATTAAG CATTGATGAA TCAACGGCGA CCCCGTTAAA CCTTACGCCT TGGTTGATGG TGAGCCACCC CACTTCGGCG AAGGAATTTA CCGAGATCCA AGCCTTGCCA AAAACGGATT GGCATAACTT CACCAATAAA GACATTCAAA AACTCAGCGG CCATGATTTT TGGCTGAGTT TCAGCTTAAC CAGCCCAGAC GATGCACTTT CACGTATTTT AGCGTTAGAT AACCCCTTGT TAGACAAGGT GACTATCTAT CATTTAGTCA ATAATAAGCT CGCTAAAACT GTGCTTATGG GCGACACCTT TCCCTATAAC GAACGGCCAT TTTTGAGCAA TATCTTCCTG TATCCTTTTA AACTCAACAT GGATGATACC CATACTTTTT ATTTGCATAT TCAGACCGAA GGCAGCGCTG CGGTATCGTT AAATCTCTGG TCATCTAACG ACTTAGCCAA GATTGCTGAA TCAACCGCCG TCGAACATGG TTTCCAACTT GGCGTACTGG CCGCGATTGG TATCTTTAGC CTCTTTATTG CGATTGCATC GGGCTCATTC AGTTACAGCT ATTATTCCGG CTACGTGCTG AGCATGACCT TGCTCGTCGC TACCATCAAC GGTTTTGCCT TTCGATTCCT CTGGCCAAAT TGGCCAATAT TACAGCAAGT TATGGTGCCG TTTTTACTGC CAATCGTTAT GGCGTTTGCG CTGATGTTTA CTGAAAAAAT ATTACAGCTC AAATATTTAA ACCGCCGCAT GCTGCTGACT TGTCGCTATA GCGCTGTGTA TATCCTATGT ATTGGACTCG CCACGCCTTT TATCCAATAT GGAACGGCGC TCTATATCGA GATCATTTCC GTTGCAGTGC TCAGCCTGGT ACTTATGGTC TTTGCTATTA CTCAGGCCAT CAATGGCCAT AAACTGGCAC GTATGTACAC TATTGGCTGG GTGAGTATGC TGACAGGAGC TTGCATCAGT AGCTTGTTGT ATCTCAGCGT GATTGACCTC AATTTAAAAC CGCAAACGCC TGTCATGCTC GGCCTGACGT TTGAAATCAT CTTTATGTCT TTGGTGCTTG CCATCCGCTA TAACGATGAA CGCAAAGCTA AGCTACGTAT TCAGCAAGAG GCCTTGAAGC AAGCACAGAA AATTCGCAGT GCGCGGGAAG AAGCCCTAAA AGCGGAAGCC GAGAGCAATG AGAAACTCGA GCAAATGGTG CAAGAGCGCA CCTTAGAACT TGAAATCACC CTCAGAGAAT TACATGAGGT AAACCAAAAG CTCACCGAAC AAAGCACTAT CGACAGTTTA ACTGGGGTTA AAAACCGCAG TGCTTTCGAT AAACGTTTGA TCGCTGAAAG CCGGATCAGC CGCAGGCAAG AAACACCCAT AGCCCTGTTG ATGCTCGATA TCGATCGCTT CAAGCTGATC AACGATAGAT TCGGCCATCT TGCAGGCGAT GAAGCCTTAC GAACCATAGC CCAAACATTA CAGCAACATT TAAAGCGGCC AACAGATCTC GTATCACGTT ATGGAGGCGA GGAGTTTGCT ATCATCCTGC CTAATACAGC AGAAGATGGT GCACTCCAAG TCGCTGAAAC GATAAGAGAC GCAGTTGCCT CAATCAATTT CGAATGGGAA GGTGTAGCGA TACCTTTGAC TATCAGTATC GGAGTCAGTG CCGATATCGT CACTAACGAT CAGCACAGCA CCAAATTATT AGAACAAGCG GATAAAGCCC TCTACCAAGC GAAAAATGGT GGACGTAATC AAGTCAGCTT ATTTTCATCA GTTCAAGCAG GACCAGTACC TAATTAG
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Protein sequence | MLKRNSSLIL LLWLWMCSTP SFATLLSIDE STATPLNLTP WLMVSHPTSA KEFTEIQALP KTDWHNFTNK DIQKLSGHDF WLSFSLTSPD DALSRILALD NPLLDKVTIY HLVNNKLAKT VLMGDTFPYN ERPFLSNIFL YPFKLNMDDT HTFYLHIQTE GSAAVSLNLW SSNDLAKIAE STAVEHGFQL GVLAAIGIFS LFIAIASGSF SYSYYSGYVL SMTLLVATIN GFAFRFLWPN WPILQQVMVP FLLPIVMAFA LMFTEKILQL KYLNRRMLLT CRYSAVYILC IGLATPFIQY GTALYIEIIS VAVLSLVLMV FAITQAINGH KLARMYTIGW VSMLTGACIS SLLYLSVIDL NLKPQTPVML GLTFEIIFMS LVLAIRYNDE RKAKLRIQQE ALKQAQKIRS AREEALKAEA ESNEKLEQMV QERTLELEIT LRELHEVNQK LTEQSTIDSL TGVKNRSAFD KRLIAESRIS RRQETPIALL MLDIDRFKLI NDRFGHLAGD EALRTIAQTL QQHLKRPTDL VSRYGGEEFA IILPNTAEDG ALQVAETIRD AVASINFEWE GVAIPLTISI GVSADIVTND QHSTKLLEQA DKALYQAKNG GRNQVSLFSS VQAGPVPN
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