| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4384 |
|---|
| Symbol | |
|---|
| ID | 5369264 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009661 |
|---|
| Strand | + |
|---|
| Start bp | 397 |
|---|
| End bp | 1371 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640819184 |
|---|
| Product | peptidase C14 caspase catalytic subunit p20 |
|---|
| Protein accession | YP_001355406 |
|---|
| Protein GI | 152998485 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4249] Uncharacterized protein containing caspase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 68 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGATCG CTTTGATAGT GGGTGTTAAC CATTACGAGC ATGGGGGTCA CCTATATGGA
TGTGTGAATG ACGCGCATTC CGTAAAAGCA ATTTTGGAAA GACACGATGG CGGTTCTGTG
AATTTTGATT GCCGATTGCT GACAGGAACA GGACCTAGCG AGACAGTTAA ACGTGGTGAT
TTAAAAGACC AAATTACTGA ATTATTTAAA GCAGATGCAG ATATTGCTTT GTTCTATTTT
GCTGGGCACG GTCATATTGA GGCTACGGGA GGTTATTTAT TAACATCGGA TGCTGCAAGA
GGCGATGAAG GTGTTTCACT TACGGAAATA CTGACAATTG CAAACAACTC CCCAGCCAAA
AACAAACTAA TTATACTTGA TAGTTGTCAC TCAGGAATTG CTGGGACACC TCCTGAAACT
GGACAACTAG CGTCGCTTGC CGAAGGTGTG ACAGTTTTAA CAGCTTCAAC TAAAGACCAG
TACGCGACAG AGCAAAATGG ACGTGGAGTT TTTACCACGT TGTTGGTTGA TGCACTAAGC
GGTAGTGCAG CCAACTTAAC AGGCGACATT ACCCCAGGGA GTATTTATGC TCATATTGAT
CAATCTCTTG GGGCATGGGA ACAACGCCCT GTTTTCAAAA CAAACGTGAA GCAATTTGTG
TCGTTAAGAA AATCCTCCCC TTCTATATCC ATTGAGGATT TAAGAAAGAT TACAACATTG
TTCCCCACTC CTGGATATTC ATTTCCTCTT GATCCTACGT TTGAACCTGA AATGAAAGGT
AGGGATGATG GAATGCCAAA CCCAGTTGAA GAAAACACAA GAATATTTTC TGTACTTCAG
AAATATAACC GATTAAACCT CCTTGTGCCT GACGGAGCGG ATCATATGTG GAATGCTGCG
ATGGAAAGTA AATCGTGCAG GCTAACCGCT CTTGGTGAAC ACTATAGAAG GTTGGTTGAA
AAGAATCGAA TCTAA
|
|---|
| Protein sequence | MRIALIVGVN HYEHGGHLYG CVNDAHSVKA ILERHDGGSV NFDCRLLTGT GPSETVKRGD
LKDQITELFK ADADIALFYF AGHGHIEATG GYLLTSDAAR GDEGVSLTEI LTIANNSPAK
NKLIILDSCH SGIAGTPPET GQLASLAEGV TVLTASTKDQ YATEQNGRGV FTTLLVDALS
GSAANLTGDI TPGSIYAHID QSLGAWEQRP VFKTNVKQFV SLRKSSPSIS IEDLRKITTL
FPTPGYSFPL DPTFEPEMKG RDDGMPNPVE ENTRIFSVLQ KYNRLNLLVP DGADHMWNAA
MESKSCRLTA LGEHYRRLVE KNRI
|
|---|
| |